- using R Under development (unstable) (2026-07-24 r90297)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)
flang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
* current time: 2026-07-25 07:06:05 UTC
- using option ‘--no-stop-on-test-error’
- checking for file ‘dbi.table/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘dbi.table’ version ‘1.0.7’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘dbi.table’ can be installed ... [9s/11s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [19s/28s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [18s/39s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [146s/224s] ERROR
Running ‘testthat.R’ [145s/224s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(dbi.table)
>
> test_check("dbi.table")
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
duckdb keeps downloaded extensions and secrets in a temporary directory:
ℹ /tmp/Rtmpvr4Uce/working_dir/RtmpPoRAkp/duckdb
This is removed when the R session ends.
• Extensions are re-downloaded each session.
• Secrets are lost.
ℹ Run duckdb(shared_home = TRUE) (or create ~/.duckdb) to keep them (suitable for most users).
ℹ Run duckdb(shared_home = FALSE) to accept the temporary directory (and silence this message).
ℹ See ?duckdb_storage for details and alternatives.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
• Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
• INSTALL/LOAD of an extension will error, and automatic extension loading is off.
ℹ Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
ℹ Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
ℹ See ?duckdb for details.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
• Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
• INSTALL/LOAD of an extension will error, and automatic extension loading is off.
ℹ Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
ℹ Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
ℹ See ?duckdb for details.
duckdb keeps downloaded extensions and secrets in a temporary directory:
ℹ /tmp/Rtmpvr4Uce/working_dir/RtmpPoRAkp/duckdb
This is removed when the R session ends.
• Extensions are re-downloaded each session.
• Secrets are lost.
ℹ Run duckdb(shared_home = TRUE) (or create ~/.duckdb) to keep them (suitable for most users).
ℹ Run duckdb(shared_home = FALSE) to accept the temporary directory (and silence this message).
ℹ See ?duckdb_storage for details and alternatives.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
• Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
• INSTALL/LOAD of an extension will error, and automatic extension loading is off.
ℹ Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
ℹ Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
ℹ See ?duckdb for details.
duckdb keeps downloaded extensions and secrets in a temporary directory:
i /tmp/Rtmpvr4Uce/working_dir/RtmpPoRAkp/duckdb
This is removed when the R session ends.
* Extensions are re-downloaded each session.
* Secrets are lost.
i Run duckdb(shared_home = TRUE) (or create ~/.duckdb) to keep them (suitable for most users).
i Run duckdb(shared_home = FALSE) to accept the temporary directory (and silence this message).
i See ?duckdb_storage for details and alternatives.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
* Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
* INSTALL/LOAD of an extension will error, and automatic extension loading is off.
i Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
i Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
i See ?duckdb for details.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
* Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
* INSTALL/LOAD of an extension will error, and automatic extension loading is off.
i Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
i Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
i See ?duckdb for details.
Saving _problems/test-DBI-methods-80.R
Saving _problems/test-DBI-methods-84.R
Saving _problems/test-DBI-methods-88.R
duckdb keeps downloaded extensions and secrets in a temporary directory:
i /tmp/Rtmpvr4Uce/working_dir/RtmpPoRAkp/duckdb
This is removed when the R session ends.
* Extensions are re-downloaded each session.
* Secrets are lost.
i Run duckdb(shared_home = TRUE) (or create ~/.duckdb) to keep them (suitable for most users).
i Run duckdb(shared_home = FALSE) to accept the temporary directory (and silence this message).
i See ?duckdb_storage for details and alternatives.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
* Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
* INSTALL/LOAD of an extension will error, and automatic extension loading is off.
i Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
i Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
i See ?duckdb for details.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
* Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
* INSTALL/LOAD of an extension will error, and automatic extension loading is off.
i Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
i Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
i See ?duckdb for details.
duckdb keeps downloaded extensions and secrets in a temporary directory:
i /tmp/Rtmpvr4Uce/working_dir/RtmpPoRAkp/duckdb
This is removed when the R session ends.
* Extensions are re-downloaded each session.
* Secrets are lost.
i Run duckdb(shared_home = TRUE) (or create ~/.duckdb) to keep them (suitable for most users).
i Run duckdb(shared_home = FALSE) to accept the temporary directory (and silence this message).
i See ?duckdb_storage for details and alternatives.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
* Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
* INSTALL/LOAD of an extension will error, and automatic extension loading is off.
i Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
i Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
i See ?duckdb for details.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
* Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
* INSTALL/LOAD of an extension will error, and automatic extension loading is off.
i Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
i Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
i See ?duckdb for details.
[ FAIL 3 | WARN 0 | SKIP 2 | PASS 421 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-mariadb.R:10:3', 'test-postgres.R:11:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-DBI-methods.R:78:3'): DBI::dbExecute works ───────────────────
Expected `{ ... }` not to throw any errors.
Actually got a <rlang_error> with message:
DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.
i Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107).
i See ?duckdb for details.
i Context: load_extension
── Failure ('test-DBI-methods.R:82:3'): DBI::dbExecute works ───────────────────
Expected `{ ... }` not to throw any errors.
Actually got a <rlang_error> with message:
DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.
i Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107).
i See ?duckdb for details.
i Context: load_extension
── Failure ('test-DBI-methods.R:86:3'): DBI::dbExecute works ───────────────────
Expected `{ ... }` not to throw any errors.
Actually got a <rlang_error> with message:
DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.
i Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107).
i See ?duckdb for details.
i Context: load_extension
[ FAIL 3 | WARN 0 | SKIP 2 | PASS 421 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [14s/17s] OK
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR