* installing *source* package ‘cpss’ ...
** this is package ‘cpss’ version ‘0.0.3’
** package ‘cpss’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++11
using C++ compiler: ‘clang version 21.1.8’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/cpss/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c algos.cpp -o algos.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c algos_custom.cpp -o algos_custom.o
algos.cpp:199:24: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
199 | if (!arma::is_finite(all_seg(l + 1, t))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos.cpp:202:24: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
202 | if (!arma::is_finite(all_seg(t + 1, r))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos.cpp:214:16: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
214 | if (!arma::is_finite(tau_hat_all(k))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos.cpp:271:24: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
271 | if (!arma::is_finite(all_seg(li + 1, ri))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos.cpp:278:28: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
278 | if (!arma::is_finite(all_seg(li + 1, t))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos.cpp:281:28: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
281 | if (!arma::is_finite(all_seg(t + 1, ri))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos.cpp:296:16: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
296 | if (!arma::is_finite(tau_hat_all(k))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos.cpp:347:20: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
347 | if (!arma::is_finite(all_seg(R_finite(i) + 1, ts))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
8 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c utils.cpp -o utils.o
algos_custom.cpp:88:24: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
88 | if (!arma::is_finite(all_seg(l + 1, t))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos_custom.cpp:91:24: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
91 | if (!arma::is_finite(all_seg(t + 1, r))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos_custom.cpp:103:16: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
103 | if (!arma::is_finite(tau_hat_all(k))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos_custom.cpp:157:24: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
157 | if (!arma::is_finite(all_seg(li + 1, ri))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos_custom.cpp:164:28: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
164 | if (!arma::is_finite(all_seg(li + 1, t))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos_custom.cpp:167:28: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
167 | if (!arma::is_finite(all_seg(t + 1, ri))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos_custom.cpp:182:16: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
182 | if (!arma::is_finite(tau_hat_all(k))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
algos_custom.cpp:230:20: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
230 | if (!arma::is_finite(all_seg(R_finite(i) + 1, ts))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
8 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o cpss.so RcppExports.o algos.o algos_custom.o utils.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/cpss/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/cpss/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/cpss/src'
installing to /data/gannet/ripley/R/packages/tests-clang/cpss.Rcheck/00LOCK-cpss/00new/cpss/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cpss)