• using R Under development (unstable) (2025-11-13 r89017)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.5     flang version 21.1.5
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘covdepGE/DESCRIPTION’ ... OK
• this is package ‘covdepGE’ version ‘1.0.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘covdepGE’ can be installed ... [58s/93s] OK See the install log for details.
• used C++ compiler: ‘clang version 21.1.5’
• checking C++ specification ... NOTE   Specified C++11: please drop specification unless essential
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/18s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [165s/174s] ERROR   Running ‘testthat.R’ [165s/174s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library(testthat)   > library(covdepGE)   >   > test_check("covdepGE")   OMP: Warning #96: Cannot form a team with 8 threads, using 2 instead.   OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   Saving _problems/test-covdepGE-347.R   Saving _problems/test-covdepGE-352.R   Saving _problems/test-covdepGE-357.R   Saving _problems/test-covdepGE-362.R   Saving _problems/test-covdepGE-367.R   Saving _problems/test-covdepGE-372.R   Saving _problems/test-covdepGE-377.R   Saving _problems/test-covdepGE-382.R   Saving _problems/test-covdepGE-387.R   Saving _problems/test-covdepGE-392.R   Saving _problems/test-covdepGE-421.R   Saving _problems/test-covdepGE-426.R   Saving _problems/test-covdepGE-428.R   Saving _problems/test-covdepGE-433.R   Saving _problems/test-covdepGE-435.R   Saving _problems/test-covdepGE-440.R   Saving _problems/test-covdepGE-442.R   Saving _problems/test-covdepGE-451.R   Saving _problems/test-covdepGE-457.R   Saving _problems/test-covdepGE-463.R   Saving _problems/test-covdepGE-469.R   Saving _problems/test-covdepGE-475.R   Saving _problems/test-covdepGE-481.R   Saving _problems/test-covdepGE-507.R   Saving _problems/test-covdepGE-512.R   [ FAIL 25 | WARN 13 | SKIP 31 | PASS 57 ]      ══ Skipped tests (31) ══════════════════════════════════════════════════════════   • On CRAN (31): 'test-covdepGE.R:7:3', 'test-covdepGE.R:174:3',     'test-covdepGE.R:181:3', 'test-covdepGE.R:336:1', 'test-covdepGE.R:341:1',     'test-covdepGE.R:345:1', 'test-covdepGE.R:350:1', 'test-covdepGE.R:355:1',     'test-covdepGE.R:360:1', 'test-covdepGE.R:365:1', 'test-covdepGE.R:370:1',     'test-covdepGE.R:375:1', 'test-covdepGE.R:380:1', 'test-covdepGE.R:385:1',     'test-covdepGE.R:390:1', 'test-covdepGE.R:408:1', 'test-covdepGE.R:414:1',     'test-covdepGE.R:419:1', 'test-covdepGE.R:424:1', 'test-covdepGE.R:431:1',     'test-covdepGE.R:438:1', 'test-covdepGE.R:445:1', 'test-covdepGE.R:454:1',     'test-covdepGE.R:460:1', 'test-covdepGE.R:466:1', 'test-covdepGE.R:472:1',     'test-covdepGE.R:478:1', 'test-covdepGE.R:489:1', 'test-covdepGE.R:497:1',     'test-covdepGE.R:505:1', 'test-covdepGE.R:510:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-covdepGE.R:346:3'): Different vertices give different plots ──   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:351:3'): Different vertices give different plots ──   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:356:3'): Different line types ─────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:361:3'): Different line size ──────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:366:3'): Different line color ─────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:371:3'): Different line color ─────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:376:3'): Different point shape ────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:381:3'): Different point size ─────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:386:3'): Different point color ────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:391:3'): Different point fill ─────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:420:3'): Row and column names are added back ──────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:425:3'): Different color 1 ────────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:427:3'): Different color 1 ────────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:432:3'): Different color 2 ────────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:434:3'): Different color 2 ────────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:439:3'): Different grid color ─────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:441:3'): Different grid color ─────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:450:3'): Include cell values ──────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:455:3'): Precision ────────────────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:461:3'): Font size ────────────────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:467:3'): Font color 1 ─────────────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:473:3'): Font color 2 ─────────────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:479:3'): Font threshold ───────────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:506:3'): Different graph_colors ───────────────────   Expected exactly one failure and no successes.   Actually failed 0 times   ── Failure ('test-covdepGE.R:511:3'): No title summary ─────────────────────────   Expected exactly one failure and no successes.   Actually failed 0 times      [ FAIL 25 | WARN 13 | SKIP 31 | PASS 57 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE