* installing *source* package ‘collapse’ ...
** package ‘collapse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 17.0.5’
using C++ compiler: ‘clang version 17.0.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/collapse/src'
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ExportSymbols.c -o ExportSymbols.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
3 warnings generated.
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c TRA.c -o TRA.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c base_radixsort.c -o base_radixsort.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c data.table_init.c -o data.table_init.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c data.table_rbindlist.c -o data.table_rbindlist.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c data.table_subset.c -o data.table_subset.o
data.table_subset.c:164:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
164 | void subsetVectorRaw(SEXP ans, SEXP source, SEXP idx, const bool anyNA)
| ^
data.table_subset.c:164:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
2 warnings generated.
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c data.table_utils.c -o data.table_utils.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c extptr.c -o extptr.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fbetween_fwithin.cpp -o fbetween_fwithin.o
In file included from fbetween_fwithin.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from fbetween_fwithin.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
3 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fbstats.cpp -o fbstats.o
In file included from fbstats.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from fbstats.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
3 warnings generated.
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fcumsum.c -o fcumsum.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fdiff_fgrowth.cpp -o fdiff_fgrowth.o
In file included from fdiff_fgrowth.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from fdiff_fgrowth.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ffirst.c -o ffirst.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c flag.cpp -o flag.o
In file included from flag.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from flag.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
3 warnings generated.
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c flast.c -o flast.o
3 warnings generated.
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fmean.c -o fmean.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fmin_fmax.c -o fmin_fmax.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fmode.c -o fmode.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fndistinct.c -o fndistinct.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fnobs.c -o fnobs.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fnth_fmedian_fquantile.c -o fnth_fmedian_fquantile.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fprod.c -o fprod.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fscale.cpp -o fscale.o
In file included from fscale.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from fscale.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fsum.c -o fsum.o
3 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fvar_fsd.cpp -o fvar_fsd.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gsplit.c -o gsplit.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c handle_attributes.c -o handle_attributes.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c join.c -o join.o
In file included from fvar_fsd.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from fvar_fsd.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c kit_dup.c -o kit_dup.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c match.c -o match.o
3 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c mrtl_mctl.cpp -o mrtl_mctl.o
In file included from mrtl_mctl.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from mrtl_mctl.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
3 warnings generated.
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c pivot.c -o pivot.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c programming.c -o programming.o
programming.c:953:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
953 | SEXP fdist(SEXP x, SEXP vec, SEXP Rret, SEXP Rnthreads) {
| ^
warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
2 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c psmat.cpp -o psmat.o
In file included from psmat.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from psmat.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pwnobs.cpp -o pwnobs.o
In file included from pwnobs.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from pwnobs.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
3 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c qF_qG.cpp -o qF_qG.o
In file included from qF_qG.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from qF_qG.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
3 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c seqid_groupid.cpp -o seqid_groupid.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c small_helper.c -o small_helper.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c stats_mAR.c -o stats_mAR.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c stats_pacf.c -o stats_pacf.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DSTRICT_R_HEADERS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c varying.cpp -o varying.o
In file included from seqid_groupid.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from seqid_groupid.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
In file included from varying.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from varying.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
3 warnings generated.
3 warnings generated.
3 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang17/lib -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o collapse.so ExportSymbols.o RcppExports.o TRA.o base_radixsort.o data.table_init.o data.table_rbindlist.o data.table_subset.o data.table_utils.o extptr.o fbetween_fwithin.o fbstats.o fcumsum.o fdiff_fgrowth.o ffirst.o flag.o flast.o fmean.o fmin_fmax.o fmode.o fndistinct.o fnobs.o fnth_fmedian_fquantile.o fprod.o fscale.o fsum.o fvar_fsd.o gsplit.o handle_attributes.o join.o kit_dup.o match.o mrtl_mctl.o pivot.o programming.o psmat.o pwnobs.o qF_qG.o seqid_groupid.o small_helper.o stats_mAR.o stats_pacf.o varying.o -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/collapse/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/collapse/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/collapse/src'
installing to /data/gannet/ripley/R/packages/tests-clang/collapse.Rcheck/00LOCK-collapse/00new/collapse/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (collapse)