• using R Under development (unstable) (2026-02-03 r89373)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.8     flang version 21.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-02-03 12:48:44Z
• using option ‘--no-stop-on-test-error’
• checking for file ‘cofeatureR/DESCRIPTION’ ... OK
• this is package ‘cofeatureR’ version ‘1.1.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘cofeatureR’ can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘tibble’   All declared Imports should be used.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... INFO   'LazyData' is specified without a 'data' directory
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... ERROR   Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(cofeatureR)   >   > test_check("cofeatureR")   Saving _problems/test_plot_cofeature_mat-23.R   [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_plot_cofeature_mat.R:23:5'): plot_cofeature_mat correctly adds tile borders ──   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `mutate_()` was deprecated in dplyr 0.7.0 and is now defunct.   ℹ Please use `mutate()` instead.   ℹ See vignette('programming') for more help   Backtrace:       ▆    1. └─cofeatureR::plot_cofeature_mat(in_df, tile.col = cur_border_col) at test_plot_cofeature_mat.R:23:5    2. └─dplyr::mutate_(in.df, .dots = setNames(list(mutate.call), "feature"))    3. └─dplyr:::lazy_defunct("mutate")    4. └─lifecycle::deprecate_stop(...)    5. └─lifecycle:::deprecate_stop0(msg)    6. └─rlang::cnd_signal(...)      [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE