• using R Under development (unstable) (2026-03-30 r89743)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 22.1.2 (https://github.com/llvm/llvm-project 1ab49a973e210e97d61e5db6557180dcb92c3e98)     flang version 22.1.2 (https://github.com/llvm/llvm-project 1ab49a973e210e97d61e5db6557180dcb92c3e98)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-03-30 19:03:37 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘climatehealth/DESCRIPTION’ ... OK
• this is package ‘climatehealth’ version ‘1.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Imports includes 37 non-default packages. Importing from so many packages makes the package vulnerable to any of them becoming unavailable. Move as many as possible to Suggests and use conditionally.
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘climatehealth’ can be installed ... [37s/92s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [5s/14s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/14s] OK
• checking whether the package can be unloaded cleanly ... [4s/12s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/13s] OK
• checking whether the namespace can be unloaded cleanly ... [5s/15s] OK
• checking loading without being on the library search path ... [5s/13s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [70s/316s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/17s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [5m/13m] ERROR   Running ‘testthat.R’ [5m/13m] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(patrick)   > library(climatehealth)   >   > test_check("climatehealth")   This is dlnm 2.4.10. For details: help(dlnm) and vignette('dlnmOverview').   OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.   OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.   OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).       *** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1   OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.   OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.   OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   Saving _problems/test_diarrhea-121.R   OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.   OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.   OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).       *** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1   OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.   OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.   OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   Saving _problems/test_malaria-142.R        |     | | 0%     |     |=================================== | 50%     |     |======================================================================| 100%   [ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ]      ══ Skipped tests (2) ═══════════════════════════════════════════════════════════   • On CRAN (2): 'test_wildfire.R:1943:3', 'test_wildfire.R:2020:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_diarrhea.R:83:3'): diarrhea_do_analysis runs end-to-end on synthetic data ──   Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode, control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode, safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned   The inla program failed and the maximum number of tries has been reached.   Backtrace:        ▆     1. ├─climatehealth:::suppress_plot(...) at test_diarrhea.R:83:3     2. │ └─base::force(expr) at ./helper-utils.R:11:3     3. ├─base::suppressWarnings(...)     4. │ └─base::withCallingHandlers(...)     5. └─climatehealth::diarrhea_do_analysis(...)     6. └─climatehealth:::run_inla_models(...)     7. └─climatehealth (local) fit(base_formula)     8. ├─INLA::inla.rerun(...)     9. │ └─base::stopifnot(any(inherits(object, "inla")))    10. └─INLA::inla(...)    11. └─INLA:::inla.core.safe(...)   ── Error ('test_malaria.R:104:3'): malaria_do_analysis runs end-to-end on synthetic data ──   Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode, control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode, safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned   The inla program failed and the maximum number of tries has been reached.   Backtrace:        ▆     1. ├─climatehealth:::suppress_plot(...) at test_malaria.R:104:3     2. │ └─base::force(expr) at ./helper-utils.R:11:3     3. ├─base::suppressWarnings(...)     4. │ └─base::withCallingHandlers(...)     5. └─climatehealth::malaria_do_analysis(...)     6. └─climatehealth:::run_inla_models(...)     7. └─climatehealth (local) fit(base_formula)     8. ├─INLA::inla.rerun(...)     9. │ └─base::stopifnot(any(inherits(object, "inla")))    10. └─INLA::inla(...)    11. └─INLA:::inla.core.safe(...)      [ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... OK
• checking PDF version of manual ... [17s/29s] OK
• checking HTML version of manual ... [20s/34s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR