Install log for 'clarabel'

* installing *source* package ‘clarabel’ ...
** this is package ‘clarabel’ version ‘0.10.1’
** package ‘clarabel’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.87.0 (99624be96 2025-05-06) (Fedora 1.87.0-2.fc42)
Using rustc 1.87.0 (17067e9ac 2025-05-09) (Fedora 1.87.0-2.fc42)
** libs
using C compiler: ‘clang version 20.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/clarabel/src'
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
export PATH="/usr/local/clang/bin:/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
  echo "Rust version:" `rustc --version` && \
  echo "Cargo version:" `cargo --version` && \
  if [ "" != "wasm32-unknown-emscripten" ]; then \
    if [ "yes" = "yes" ]; then \
      mkdir -p /data/gannet/ripley/R/packages/tests-clang/clarabel/src/rust/.cargo;  \
      cp ./rust/cargo_vendor_config.toml /data/gannet/ripley/R/packages/tests-clang/clarabel/src/rust/.cargo/config.toml;  \
      /usr/bin/gtar --extract --xz -f ./rust/vendor.tar.xz -C ./rust ;  \
      export CARGO_HOME=/data/gannet/ripley/R/packages/tests-clang/clarabel/src/rust/.cargo;  \
      export R_HOME=/data/gannet/ripley/R/R-clang;  \
      export PATH="/usr/local/clang/bin:/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin";  \
      cargo build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /data/gannet/ripley/R/packages/tests-clang/clarabel/src/rust/target --release --offline; \
    else \
      cargo build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /data/gannet/ripley/R/packages/tests-clang/clarabel/src/rust/target; \
    fi \
  else \
    export CC="clang-20 -std=gnu23" && \
    export R_HOME="/data/gannet/ripley/R/R-clang" && \
    export CFLAGS="-O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 " && \
    export CARGO_PROFILE_DEV_PANIC="abort" && \
    export CARGO_PROFILE_RELEASE_PANIC="abort" && \
    cargo +nightly build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /data/gannet/ripley/R/packages/tests-clang/clarabel/src/rust/target -Zbuild-std=panic_abort,std; \
  fi
Rust version: rustc 1.87.0 (17067e9ac 2025-05-09) (Fedora 1.87.0-2.fc42)
Cargo version: cargo 1.87.0 (99624be96 2025-05-06) (Fedora 1.87.0-2.fc42)
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
   Compiling proc-macro2 v1.0.95
   Compiling unicode-ident v1.0.18
   Compiling quote v1.0.40
   Compiling syn v2.0.100
   Compiling syn v1.0.109
   Compiling autocfg v1.4.0
   Compiling num-traits v0.2.19
   Compiling ident_case v1.0.1
   Compiling libc v0.2.172
   Compiling fnv v1.0.7
   Compiling strsim v0.10.0
   Compiling darling_core v0.14.4
   Compiling memchr v2.7.4
   Compiling r-src v0.2.2 (https://github.com/bnaras/r-src?rev=03e133e1947cf96829f28bd3ebbd906391523dc2#03e133e1)
   Compiling darling_macro v0.14.4
   Compiling darling v0.14.4
   Compiling shlex v1.3.0
   Compiling serde v1.0.219
   Compiling cc v1.2.19
   Compiling derive_builder_core v0.11.2
   Compiling num-complex v0.4.6
   Compiling serde_derive v1.0.219
   Compiling thiserror v1.0.69
   Compiling rustversion v1.0.20
   Compiling serde_json v1.0.140
   Compiling savvy v0.8.9
   Compiling derive_builder_macro v0.11.2
   Compiling aho-corasick v1.1.3
   Compiling blas-sys v0.7.1
   Compiling lapack-sys v0.14.0
   Compiling thiserror-impl v1.0.69
   Compiling savvy-bindgen v0.8.9
   Compiling once_cell v1.21.3
   Compiling itoa v1.0.15
   Compiling equivalent v1.0.2
   Compiling regex-syntax v0.8.5
   Compiling clarabel v0.10.0 (https://github.com/oxfordcontrol/Clarabel.rs?rev=c2f76b69a157c1917101e76098e970f1e026d5f5#c2f76b69)
   Compiling hashbrown v0.15.2
   Compiling ryu v1.0.20
   Compiling either v1.15.0
   Compiling regex-automata v0.4.9
   Compiling itertools v0.11.0
   Compiling indexmap v2.9.0
   Compiling savvy-macro v0.8.9
   Compiling enum_dispatch v0.3.13
   Compiling lapack v0.19.0
   Compiling blas v0.22.0
   Compiling derive_builder v0.11.2
   Compiling lapack-src v0.11.0
   Compiling blas-src v0.11.1
   Compiling amd v0.2.2
   Compiling savvy-ffi v0.8.9
   Compiling lazy_static v1.5.0
   Compiling cfg-if v1.0.0
   Compiling regex v1.11.1
   Compiling clarabel v0.10.1 (/data/gannet/ripley/R/packages/tests-clang/clarabel/src/rust)
    Finished `release` profile [optimized] target(s) in 2m 18s
rm -Rf /data/gannet/ripley/R/packages/tests-clang/clarabel/src/rust/.cargo
rm -Rf ./rust/vendor
rm -Rf /data/gannet/ripley/R/packages/tests-clang/clarabel/src/rust/target/release/build
clang-20 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o clarabel.so init.o -L/data/gannet/ripley/R/packages/tests-clang/clarabel/src/rust/target/release -lclarabel -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
rm -f /data/gannet/ripley/R/packages/tests-clang/clarabel/src/rust/target/release/libclarabel.a
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/clarabel/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/clarabel/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/clarabel/src'
installing to /data/gannet/ripley/R/packages/tests-clang/clarabel.Rcheck/00LOCK-clarabel/00new/clarabel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clarabel)