• using R Under development (unstable) (2024-09-13 r87146)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 18.1.8     flang-new version 18.1.8
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘ccoptimalmatch/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ccoptimalmatch’ version ‘0.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ccoptimalmatch’ can be installed ... [7s/10s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/14s] OK
• checking Rd files ... NOTE checkRd: (-1) being_processed.Rd:19: Lost braces; missing escapes or markup?     19 | \item {cluster_case}: {each case forms a cluster with all poosible controls to be matched}        | ^ checkRd: (-1) being_processed.Rd:20: Lost braces; missing escapes or markup?     20 | \item {Patient_Id}: {Unique identifier for each patient}        | ^ checkRd: (-1) being_processed.Rd:21: Lost braces; missing escapes or markup?     21 | \item {case_control}: {binary, if case==Colorectal Cancer, else control}        | ^ checkRd: (-1) being_processed.Rd:22: Lost braces; missing escapes or markup?     22 | \item {case_ind}: {binary, if 1==case, else control}        | ^ checkRd: (-1) being_processed.Rd:23: Lost braces; missing escapes or markup?     23 | \item {JCG}: {Year of Contact}        | ^ checkRd: (-1) being_processed.Rd:24: Lost braces; missing escapes or markup?     24 | \item {entry_year}: {the year that the patient first entrered the database}        | ^ checkRd: (-1) being_processed.Rd:25: Lost braces; missing escapes or markup?     25 | \item {CI}: {Comorbidity Index. Count of chronic diseases before index data}        | ^ checkRd: (-1) being_processed.Rd:26: Lost braces; missing escapes or markup?     26 | \item {age_diff}: {difference of age between cases and controls}        | ^ checkRd: (-1) being_processed.Rd:27: Lost braces; missing escapes or markup?     27 | \item {fup_diff}: {difference of follow-up between cases and controls}        | ^ checkRd: (-1) being_processed.Rd:28: Lost braces; missing escapes or markup?     28 | \item {total_control_per_case}: {total controls that are available to be pooled per case}        | ^ checkRd: (-1) being_processed.Rd:29: Lost braces; missing escapes or markup?     29 | \item {freq_of_controls}: {how many times the control is available to be matched for different cases}        | ^ checkRd: (-1) not_processed.Rd:19: Lost braces; missing escapes or markup?     19 | \item {Patient_Id}: {Unique identifier for each patient}        | ^ checkRd: (-1) not_processed.Rd:20: Lost braces; missing escapes or markup?     20 | \item {JCG}: {Year of Contact}        | ^ checkRd: (-1) not_processed.Rd:21: Lost braces; missing escapes or markup?     21 | \item {Birth_Year}: {Patient's year of birth}        | ^ checkRd: (-1) not_processed.Rd:22: Lost braces; missing escapes or markup?     22 | \item {Gender}: {Patient's Gender}        | ^ checkRd: (-1) not_processed.Rd:23: Lost braces; missing escapes or markup?     23 | \item {Practice_Id}: {Patient's general practice}        | ^ checkRd: (-1) not_processed.Rd:24: Lost braces; missing escapes or markup?     24 | \item {case_control}: {binary, if case==Colorectal Cancer, else control}        | ^ checkRd: (-1) not_processed.Rd:25: Lost braces; missing escapes or markup?     25 | \item {entry_year}: {the year that the patient first entrered the database}        | ^ checkRd: (-1) not_processed.Rd:26: Lost braces; missing escapes or markup?     26 | \item {fup_diff}: {difference of follow-up between cases and controls}        | ^ checkRd: (-1) not_processed.Rd:27: Lost braces; missing escapes or markup?     27 | \item {CI}: {Comorbidity Index. Count of chronic diseases before index data}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [30s/41s] OK
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE