Install log for 'capybara'

* installing *source* package ‘capybara’ ...
** this is package ‘capybara’ version ‘1.0.1’
** package ‘capybara’ successfully unpacked and MD5 sums checked
** using staged installation
Not using optimization flags
Number of available cores: 12
creating src/Makevars
** libs
using C++ compiler: ‘clang version 20.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/capybara/src'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c 01_linear_algebra.cpp -o 01_linear_algebra.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c 02_center_variables.cpp -o 02_center_variables.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c 03_lm_fit.cpp -o 03_lm_fit.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c 04_glm_fit.cpp -o 04_glm_fit.o
04_glm_fit.cpp:379:38: warning: braces around scalar initializer [-Wbraced-scalar-init]
  379 |       "conv"_nm = writable::logicals({conv}),
      |                                      ^~~~~~
1 warning generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c 05_glm_offset_fit.cpp -o 05_glm_offset_fit.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c 06_get_alpha.cpp -o 06_get_alpha.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c 07_group_sums.cpp -o 07_group_sums.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c cpp11.cpp -o cpp11.o
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o capybara.so 01_linear_algebra.o 02_center_variables.o 03_lm_fit.o 04_glm_fit.o 05_glm_offset_fit.o 06_get_alpha.o 07_group_sums.o cpp11.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/capybara/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/capybara/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/capybara/src'
installing to /data/gannet/ripley/R/packages/tests-clang/capybara.Rcheck/00LOCK-capybara/00new/capybara/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (capybara)