• using R Under development (unstable) (2025-07-22 r88445)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 20.1.8     flang version 20.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘broom/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘broom’ version ‘1.0.8’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘broom’ can be installed ... [21s/26s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [34s/39s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [103s/106s] ERROR Running examples in ‘broom-Ex.R’ failed The error most likely occurred in: > ### Name: tidy.epi.2by2 > ### Title: Tidy a(n) epi.2by2 object > ### Aliases: tidy.epi.2by2 epiR_tidiers > > ### ** Examples > > ## Don't show: > if (rlang::is_installed("epiR")) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf + ## End(Don't show) + + # load libraries for models and data + library(epiR) + + # generate data + dat <- matrix(c(13, 2163, 5, 3349), nrow = 2, byrow = TRUE) + + rownames(dat) <- c("DF+", "DF-") + colnames(dat) <- c("FUS+", "FUS-") + + # fit model + fit <- epi.2by2( + dat = as.table(dat), method = "cross.sectional", + conf.level = 0.95, units = 100, outcome = "as.columns" + ) + + # summarize model fit with tidiers + tidy(fit, parameters = "moa") + tidy(fit, parameters = "stat") + ## Don't show: + }) # examplesIf > library(epiR) Loading required package: survival Package epiR 2.0.85 is loaded Type help(epi.about) for summary information Type browseVignettes(package = 'epiR') to learn how to use epiR for applied epidemiological analyses > dat <- matrix(c(13, 2163, 5, 3349), nrow = 2, byrow = TRUE) > rownames(dat) <- c("DF+", "DF-") > colnames(dat) <- c("FUS+", "FUS-") > fit <- epi.2by2(dat = as.table(dat), method = "cross.sectional", conf.level = 0.95, + units = 100, outcome = "as.columns") > tidy(fit, parameters = "moa") Error in `dplyr::bind_rows()`: ! Can't combine `PR.strata.wald$test.statistic` <double> and `chi2.strata.fisher$test.statistic` <character>. Backtrace:      ▆   1. ├─(if (getRversion() >= "3.4") withAutoprint else force)(...)   2. │ └─base::source(...)   3. │ ├─base::withVisible(eval(ei, envir))   4. │ └─base::eval(ei, envir)   5. │ └─base::eval(ei, envir)   6. ├─generics::tidy(fit, parameters = "moa")   7. ├─broom:::tidy.epi.2by2(fit, parameters = "moa")   8. │ └─dplyr::bind_rows(massoc[names(massoc) != "chi2.correction"], .id = "term")   9. │ └─vctrs::vec_rbind(!!!dots, .names_to = .id, .error_call = current_env())  10. └─vctrs (local) `<fn>`()  11. └─vctrs::vec_default_ptype2(...)  12. ├─base::withRestarts(...)  13. │ └─base (local) withOneRestart(expr, restarts[[1L]])  14. │ └─base (local) doWithOneRestart(return(expr), restart)  15. └─vctrs::stop_incompatible_type(...)  16. └─vctrs:::stop_incompatible(...)  17. └─vctrs:::stop_vctrs(...)  18. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [36s/37s] OK   Running ‘spelling.R’   Running ‘test-all.R’ [18s/19s]   Running ‘testthat.R’ [17s/17s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [14s/14s] OK
• checking PDF version of manual ... [26s/26s] OK
• checking HTML version of manual ... [16s/16s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR