* installing *source* package ‘bioPN’ ...
** package ‘bioPN’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bioPN/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c GibsonBruck.c -o GibsonBruck.o
GibsonBruck.c:83:31: warning: assigning to 'DL_FUNC' (aka 'void *(*)(void)') from 'void *' converts between void pointer and function pointer [-Wpedantic]
   83 |       pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
      |                               ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c GillespieDirectCR.c -o GillespieDirectCR.o
GillespieDirectCR.c:83:31: warning: assigning to 'DL_FUNC' (aka 'void *(*)(void)') from 'void *' converts between void pointer and function pointer [-Wpedantic]
   83 |       pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
      |                               ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c GillespieDirectGB.c -o GillespieDirectGB.o
GillespieDirectGB.c:110:31: warning: assigning to 'DL_FUNC' (aka 'void *(*)(void)') from 'void *' converts between void pointer and function pointer [-Wpedantic]
  110 |       pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
      |                               ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c GillespieOptimDirect.c -o GillespieOptimDirect.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c HaseltineRawlings.c -o HaseltineRawlings.o
GillespieOptimDirect.c:76:31: warning: assigning to 'DL_FUNC' (aka 'void *(*)(void)') from 'void *' converts between void pointer and function pointer [-Wpedantic]
   76 |       pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
      |                               ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HaseltineRawlings.c:126:31: warning: assigning to 'DL_FUNC' (aka 'void *(*)(void)') from 'void *' converts between void pointer and function pointer [-Wpedantic]
  126 |       pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
      |                               ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c PartitionedLeaping.c -o PartitionedLeaping.o
PartitionedLeaping.c:81:31: warning: assigning to 'DL_FUNC' (aka 'void *(*)(void)') from 'void *' converts between void pointer and function pointer [-Wpedantic]
   81 |       pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
      |                               ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 warning generated.
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c helper.c -o helper.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c mean_sd.c -o mean_sd.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c prdgrm.c -o prdgrm.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c quicksort.c -o quicksort.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o bioPN.so GibsonBruck.o GillespieDirectCR.o GillespieDirectGB.o GillespieOptimDirect.o HaseltineRawlings.o PartitionedLeaping.o helper.o mean_sd.o prdgrm.o quicksort.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bioPN/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bioPN/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bioPN/src'
installing to /data/gannet/ripley/R/packages/tests-clang/bioPN.Rcheck/00LOCK-bioPN/00new/bioPN/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bioPN)