* installing *source* package ‘bgms’ ... ** this is package ‘bgms’ version ‘0.2.0.0’ ** package ‘bgms’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++20 using C++ compiler: ‘clang version 22.1.8’ using C++20 make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/bgms/src' clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c bgmCompare_gradient_interface.cpp -o bgmCompare_gradient_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c bgmCompare_interface.cpp -o bgmCompare_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c cholupdate_test_interface.cpp -o cholupdate_test_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c edge_prior_correction_test_interface.cpp -o edge_prior_correction_test_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c explog_interface.cpp -o explog_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ggm_gibbs_test_interface.cpp -o ggm_gibbs_test_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ggm_gradient_interface.cpp -o ggm_gradient_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c math/cholupdate.cpp -o math/cholupdate.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c math/custom_explog.cpp -o math/custom_explog.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mcmc/algorithms/hamiltonian_utils.cpp -o mcmc/algorithms/hamiltonian_utils.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mcmc/algorithms/leapfrog.cpp -o mcmc/algorithms/leapfrog.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mcmc/algorithms/metropolis.cpp -o mcmc/algorithms/metropolis.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mcmc/algorithms/nuts.cpp -o mcmc/algorithms/nuts.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mcmc/execution/chain_runner.cpp -o mcmc/execution/chain_runner.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mcmc_diagnostics.cpp -o mcmc_diagnostics.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mixed_gradient_interface.cpp -o mixed_gradient_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mixed_indicator_test_interface.cpp -o mixed_indicator_test_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c models/bgmCompare/bgmCompare_helper.cpp -o models/bgmCompare/bgmCompare_helper.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c models/bgmCompare/bgmCompare_logp_and_grad.cpp -o models/bgmCompare/bgmCompare_logp_and_grad.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c models/bgmCompare/bgmCompare_sampler.cpp -o models/bgmCompare/bgmCompare_sampler.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c models/ggm/ggm_gradient.cpp -o models/ggm/ggm_gradient.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c models/ggm/ggm_model.cpp -o models/ggm/ggm_model.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c models/ggm/zratio_engine.cpp -o models/ggm/zratio_engine.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c models/mixed/mixed_mrf_gradient.cpp -o models/mixed/mixed_mrf_gradient.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c models/mixed/mixed_mrf_likelihoods.cpp -o models/mixed/mixed_mrf_likelihoods.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c models/mixed/mixed_mrf_metropolis.cpp -o models/mixed/mixed_mrf_metropolis.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c models/mixed/mixed_mrf_model.cpp -o models/mixed/mixed_mrf_model.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c models/omrf/omrf_model.cpp -o models/omrf/omrf_model.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mrf_prediction.cpp -o mrf_prediction.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mrf_simulation.cpp -o mrf_simulation.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c omrf_residual_test_interface.cpp -o omrf_residual_test_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c prior_test_interface.cpp -o prior_test_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c priors/sbm_edge_prior.cpp -o priors/sbm_edge_prior.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sample_ggm.cpp -o sample_ggm.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sample_mixed.cpp -o sample_mixed.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sample_omrf.cpp -o sample_omrf.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sbm_correction_test_interface.cpp -o sbm_correction_test_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sbm_edge_prior_interface.cpp -o sbm_edge_prior_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c utils/progress_manager.cpp -o utils/progress_manager.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c utils/variable_helpers.cpp -o utils/variable_helpers.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c warmup_schedule_test_interface.cpp -o warmup_schedule_test_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c zratio_interface.cpp -o zratio_interface.o clang++-22 -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dqrng/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang22me/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c zratio_test_interface.cpp -o zratio_test_interface.o clang++-22 -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22me/lib -L/usr/local/clang22me/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o bgms.so RcppExports.o bgmCompare_gradient_interface.o bgmCompare_interface.o cholupdate_test_interface.o edge_prior_correction_test_interface.o explog_interface.o ggm_gibbs_test_interface.o ggm_gradient_interface.o math/cholupdate.o math/custom_explog.o mcmc/algorithms/hamiltonian_utils.o mcmc/algorithms/leapfrog.o mcmc/algorithms/metropolis.o mcmc/algorithms/nuts.o mcmc/execution/chain_runner.o mcmc_diagnostics.o mixed_gradient_interface.o mixed_indicator_test_interface.o models/bgmCompare/bgmCompare_helper.o models/bgmCompare/bgmCompare_logp_and_grad.o models/bgmCompare/bgmCompare_sampler.o models/ggm/ggm_gradient.o models/ggm/ggm_model.o models/ggm/zratio_engine.o models/mixed/mixed_mrf_gradient.o models/mixed/mixed_mrf_likelihoods.o models/mixed/mixed_mrf_metropolis.o models/mixed/mixed_mrf_model.o models/omrf/omrf_model.o mrf_prediction.o mrf_simulation.o omrf_residual_test_interface.o prior_test_interface.o priors/sbm_edge_prior.o sample_ggm.o sample_mixed.o sample_omrf.o sbm_correction_test_interface.o sbm_edge_prior_interface.o utils/progress_manager.o utils/variable_helpers.o warmup_schedule_test_interface.o zratio_interface.o zratio_test_interface.o -L/data/localhost/ripley/R/R-clang/lib -lRlapack -L/data/localhost/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/bgms/src' make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/bgms/src' make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/bgms/src' installing to /data/localhost/ripley/R/packages/tests-clang/bgms.Rcheck/00LOCK-bgms/00new/bgms/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bgms)