* installing *source* package ‘bayesm’ ...
** package ‘bayesm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bayesm/src'
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c bayesBLP_rcpp_loop.cpp -o bayesBLP_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c breg_rcpp.cpp -o breg_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c cgetC_rcpp.cpp -o cgetC_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c clusterMix_rcpp_loop.cpp -o clusterMix_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c functionTiming.cpp -o functionTiming.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c ghkvec_rcpp.cpp -o ghkvec_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c llmnl_rcpp.cpp -o llmnl_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c lndIChisq_rcpp.cpp -o lndIChisq_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c lndIWishart_rcpp.cpp -o lndIWishart_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c lndMvn_rcpp.cpp -o lndMvn_rcpp.o
clusterMix_rcpp_loop.cpp:39:11: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
      if ((z[j]==0) & (Sim(j,i)==1)){
          ^~~~~~~~~~~~~~~~~~~~~~~~~
                    &&
clusterMix_rcpp_loop.cpp:39:11: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c lndMvst_rcpp.cpp -o lndMvst_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rDPGibbs_rcpp_loop.cpp -o rDPGibbs_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rbprobitGibbs_rcpp_loop.cpp -o rbprobitGibbs_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rdirichlet_rcpp.cpp -o rdirichlet_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rhierLinearMixture_rcpp_loop.cpp -o rhierLinearMixture_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rhierLinearModel_rcpp_loop.cpp -o rhierLinearModel_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rhierMnlDP_rcpp_loop.cpp -o rhierMnlDP_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rhierMnlRwMixture_rcpp_loop.cpp -o rhierMnlRwMixture_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rhierNegbinRw_rcpp_loop.cpp -o rhierNegbinRw_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rivDP_rcpp_loop.cpp -o rivDP_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rivgibbs_rcpp_loop.cpp -o rivgibbs_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rmixGibbs_rcpp.cpp -o rmixGibbs_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rmixture_rcpp.cpp -o rmixture_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rmnlIndepMetrop_rcpp_loop.cpp -o rmnlIndepMetrop_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rmnpGibbs_rcpp_loop.cpp -o rmnpGibbs_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rmultireg_rcpp.cpp -o rmultireg_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rmvpGibbs_rcpp_loop.cpp -o rmvpGibbs_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rmvst_rcpp.cpp -o rmvst_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rnegbinRw_rcpp_loop.cpp -o rnegbinRw_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rnmixGibbs_rcpp_loop.cpp -o rnmixGibbs_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rordprobitGibbs_rcpp_loop.cpp -o rordprobitGibbs_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rscaleUsage_rcpp_loop.cpp -o rscaleUsage_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rsurGibbs_rcpp_loop.cpp -o rsurGibbs_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rtrun_rcpp.cpp -o rtrun_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c runiregGibbs_rcpp_loop.cpp -o runiregGibbs_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c runireg_rcpp_loop.cpp -o runireg_rcpp_loop.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c rwishart_rcpp.cpp -o rwishart_rcpp.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c trunNorm.cpp -o trunNorm.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c utilityFunctions.cpp -o utilityFunctions.o
clang++ -std=gnu++14 -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o bayesm.so RcppExports.o bayesBLP_rcpp_loop.o breg_rcpp.o cgetC_rcpp.o clusterMix_rcpp_loop.o functionTiming.o ghkvec_rcpp.o llmnl_rcpp.o lndIChisq_rcpp.o lndIWishart_rcpp.o lndMvn_rcpp.o lndMvst_rcpp.o rDPGibbs_rcpp_loop.o rbprobitGibbs_rcpp_loop.o rdirichlet_rcpp.o rhierLinearMixture_rcpp_loop.o rhierLinearModel_rcpp_loop.o rhierMnlDP_rcpp_loop.o rhierMnlRwMixture_rcpp_loop.o rhierNegbinRw_rcpp_loop.o rivDP_rcpp_loop.o rivgibbs_rcpp_loop.o rmixGibbs_rcpp.o rmixture_rcpp.o rmnlIndepMetrop_rcpp_loop.o rmnpGibbs_rcpp_loop.o rmultireg_rcpp.o rmvpGibbs_rcpp_loop.o rmvst_rcpp.o rnegbinRw_rcpp_loop.o rnmixGibbs_rcpp_loop.o rordprobitGibbs_rcpp_loop.o rscaleUsage_rcpp_loop.o rsurGibbs_rcpp_loop.o rtrun_rcpp.o runiregGibbs_rcpp_loop.o runireg_rcpp_loop.o rwishart_rcpp.o trunNorm.o utilityFunctions.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bayesm/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bayesm/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bayesm/src'
installing to /data/gannet/ripley/R/packages/tests-clang/bayesm.Rcheck/00LOCK-bayesm/00new/bayesm/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayesm)