Install log for 'bayesianVARs'

* installing *source* package ‘bayesianVARs’ ...
** this is package ‘bayesianVARs’ version ‘0.1.6’
** package ‘bayesianVARs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 21.1.8’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bayesianVARs/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_NO_DEBUG -I'/data/gannet/ripley/R/test-clang/factorstochvol/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/stochvol/include' -I'/data/gannet/ripley/R/test-clang/lpSolveAPI/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_NO_DEBUG -I'/data/gannet/ripley/R/test-clang/factorstochvol/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/stochvol/include' -I'/data/gannet/ripley/R/test-clang/lpSolveAPI/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c bvar_cpp.cpp -o bvar_cpp.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_NO_DEBUG -I'/data/gannet/ripley/R/test-clang/factorstochvol/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/stochvol/include' -I'/data/gannet/ripley/R/test-clang/lpSolveAPI/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c gig_vec.cpp -o gig_vec.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_NO_DEBUG -I'/data/gannet/ripley/R/test-clang/factorstochvol/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/stochvol/include' -I'/data/gannet/ripley/R/test-clang/lpSolveAPI/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c irf.cpp -o irf.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_NO_DEBUG -I'/data/gannet/ripley/R/test-clang/factorstochvol/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/stochvol/include' -I'/data/gannet/ripley/R/test-clang/lpSolveAPI/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c sample_coefficients.cpp -o sample_coefficients.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_NO_DEBUG -I'/data/gannet/ripley/R/test-clang/factorstochvol/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/stochvol/include' -I'/data/gannet/ripley/R/test-clang/lpSolveAPI/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c utilities_cpp.cpp -o utilities_cpp.o
In file included from irf.cpp:1:
In file included from /usr/local/clang21/bin/../include/c++/v1/memory:950:
In file included from /usr/local/clang21/bin/../include/c++/v1/__memory/inout_ptr.h:16:
In file included from /usr/local/clang21/bin/../include/c++/v1/__memory/shared_ptr.h:36:
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:77:5: warning: delete called on 'Solver' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
   77 |     delete __ptr;
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:290:7: note: in instantiation of member function 'std::default_delete<Solver>::operator()' requested here
  290 |       __deleter_(__tmp);
      |       ^
irf.cpp:374:10: note: in instantiation of member function 'std::unique_ptr<Solver>::reset' requested here
  374 |                 solver.reset(new RandomizedSolver(n_variables, tol));
      |                        ^
irf.cpp:187:30: warning: private field 'set_presolve' is not used [-Wunused-private-field]
  187 |         lp_func_ptr<void, int, int> set_presolve = NULL; //do not combine presolve and recycling!!
      |                                     ^
utilities_cpp.cpp:407:7: warning: variable 'factors' set but not used [-Wunused-but-set-variable]
  407 |   int factors = logvar.n_cols;
      |       ^
2 warnings generated.
1 warning generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o bayesianVARs.so RcppExports.o bvar_cpp.o gig_vec.o irf.o sample_coefficients.o utilities_cpp.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bayesianVARs/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/bayesianVARs/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/bayesianVARs/src'
installing to /data/gannet/ripley/R/packages/tests-clang/bayesianVARs.Rcheck/00LOCK-bayesianVARs/00new/bayesianVARs/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayesianVARs)