* installing *source* package ‘automerge’ ... ** this is package ‘automerge’ version ‘0.4.0’ ** package ‘automerge’ successfully unpacked and MD5 sums checked ** using staged installation Checking for system automerge installation... System automerge not found, building from bundled source... Building automerge-c... using Rust package manager: 'cargo 1.93.1 (083ac5135 2025-12-15) (Fedora 1.93.1-1.fc42)' using Rust compiler: 'rustc 1.93.1 (01f6ddf75 2026-02-11) (Fedora 1.93.1-1.fc42)' Extracting vendored Rust dependencies... -- The C compiler identification is Clang 22.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/bin/clang-22 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (1.4s) -- Generating done (0.0s) -- Build files have been written to: /data/gannet/ripley/R/packages/tests-clang/automerge/am-build Building (this may take several minutes)... gmake[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/automerge/am-build' [ 12%] Producing the bindings' artifacts with Cargo... -- Touching "/data/gannet/ripley/R/packages/tests-clang/automerge/src/automerge/rust/automerge-c/cbindgen.toml" if NOT_EXISTS "/data/gannet/ripley/R/packages/tests-clang/automerge/am-build/include/automerge-c/automerge.h"... -- Touched "/data/gannet/ripley/R/packages/tests-clang/automerge/src/automerge/rust/automerge-c/cbindgen.toml". warning: profiles for the non root package will be ignored, specify profiles at the workspace root: package: /data/gannet/ripley/R/packages/tests-clang/automerge/src/automerge/rust/hexane/Cargo.toml workspace: /data/gannet/ripley/R/packages/tests-clang/automerge/src/automerge/rust/Cargo.toml warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter Compiling proc-macro2 v1.0.106 Compiling unicode-ident v1.0.24 Compiling quote v1.0.44 Compiling syn v2.0.116 Compiling libc v0.2.182 Compiling serde_core v1.0.228 Compiling typenum v1.19.0 Compiling serde_derive v1.0.228 Compiling zmij v1.0.21 Compiling hybrid-array v0.4.7 Compiling winnow v0.7.14 Compiling serde v1.0.228 Compiling cfg-if v1.0.4 Compiling serde_json v1.0.149 Compiling toml_parser v1.0.9+spec-1.1.0 Compiling serde_spanned v1.0.4 Compiling toml_datetime v0.7.5+spec-1.1.0 Compiling remove_dir_all v0.5.3 Compiling cbindgen v0.29.2 Compiling thiserror v2.0.18 Compiling equivalent v1.0.2 Compiling hashbrown v0.16.1 Compiling itoa v1.0.17 Compiling fastrand v1.9.0 Compiling memchr v2.8.0 Compiling crc32fast v1.5.0 Compiling tempfile v3.3.0 Compiling indexmap v2.13.0 Compiling toml v0.9.12+spec-1.1.0 Compiling crypto-common v0.2.0 Compiling block-buffer v0.11.0 Compiling thiserror-impl v2.0.18 Compiling getrandom v0.3.4 Compiling simd-adler32 v0.3.8 Compiling heck v0.5.0 Compiling adler2 v2.0.1 Compiling once_cell v1.21.3 Compiling log v0.4.29 Compiling tracing-core v0.1.36 Compiling miniz_oxide v0.8.9 Compiling digest v0.11.0 Compiling tracing-attributes v0.1.31 Compiling leb128 v0.2.5 Compiling cpufeatures v0.2.17 Compiling rand_core v0.9.5 Compiling pin-project-lite v0.2.16 Compiling either v1.15.0 Compiling rand v0.9.2 Compiling itertools v0.14.0 Compiling tracing v0.1.44 Compiling sha2 v0.11.0-rc.5 Compiling hexane v0.1.7 (/data/gannet/ripley/R/packages/tests-clang/automerge/src/automerge/rust/hexane) Compiling flate2 v1.1.9 Compiling smol_str v0.2.2 Compiling unicode-segmentation v1.12.0 Compiling rustc-hash v2.1.1 Compiling hex v0.4.3 Compiling automerge v0.7.3 (/data/gannet/ripley/R/packages/tests-clang/automerge/src/automerge/rust/automerge) Compiling automerge-c v0.3.0 (/data/gannet/ripley/R/packages/tests-clang/automerge/src/automerge/rust/automerge-c) warning: unused import: `to_expand_mark` --> automerge-c/src/doc/mark.rs:32:16 | 32 | pub(crate) use to_expand_mark; | ^^^^^^^^^^^^^^ | = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default warning: unused import: `to_sync_state` --> automerge-c/src/sync/state.rs:18:16 | 18 | pub(crate) use to_sync_state; | ^^^^^^^^^^^^^ warning: `automerge-c` (lib) generated 2 warnings (run `cargo fix --lib -p automerge-c` to apply 2 suggestions) Finished `release` profile [optimized] target(s) in 6m 54s -- Replacing "A_M([^_]+)_" with "AM_\1_" in "/data/gannet/ripley/R/packages/tests-clang/automerge/am-build/include/automerge-c/automerge.h"... -- Created/updated "/data/gannet/ripley/R/packages/tests-clang/automerge/am-build/include/automerge-c/automerge.h". -- Replacing "USIZE_" with "+8" in "/data/gannet/ripley/R/packages/tests-clang/automerge/am-build/include/automerge-c/automerge.h"... -- Created/updated "/data/gannet/ripley/R/packages/tests-clang/automerge/am-build/include/automerge-c/automerge.h". [ 12%] Built target automerge_core_artifacts [ 25%] Generating the enum string functions with CMake... -- Generating header file "/data/gannet/ripley/R/packages/tests-clang/automerge/am-build/include/automerge-c/utils/enum_string.h"... -- Generating source file "/data/gannet/ripley/R/packages/tests-clang/automerge/am-build/src/utils/enum_string.c"... [ 37%] Building C object CMakeFiles/automerge.dir/src/utils/result.c.o [ 50%] Building C object CMakeFiles/automerge.dir/src/utils/stack_callback_data.c.o [ 62%] Building C object CMakeFiles/automerge.dir/src/utils/stack.c.o [ 75%] Building C object CMakeFiles/automerge.dir/src/utils/string.c.o [ 87%] Building C object CMakeFiles/automerge.dir/src/utils/enum_string.c.o [100%] Linking C static library libautomerge.a Merging the libraries' constituent object files... Merging its dependent libraries into /data/gannet/ripley/R/packages/tests-clang/automerge/am-build/libautomerge.a... /usr/bin/llvm-ar -x /data/gannet/ripley/R/packages/tests-clang/automerge/am-build/Cargo/target/x86_64-unknown-linux-gnu/release/libautomerge_core.a /usr/bin/llvm-ar -rs libautomerge.a objects/automerge_core/*.o [100%] Built target automerge gmake[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/automerge/am-build' gmake[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/automerge/am-build' [ 12%] Built target automerge_core_artifacts [100%] Built target automerge Install the project... -- Install configuration: "Release" gmake[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/automerge/am-build' Successfully built automerge-c from source Configuration: PKG_CFLAGS: -I../am-install/include PKG_LIBS: ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt ** libs using C compiler: ‘clang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/automerge/src' clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../am-install/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c changes.c -o changes.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../am-install/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cursors.c -o cursors.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../am-install/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c document.c -o document.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../am-install/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c errors.c -o errors.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../am-install/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../am-install/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c memory.c -o memory.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../am-install/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c objects.c -o objects.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../am-install/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c sync.c -o sync.o clang-22 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o automerge.so changes.o cursors.o document.o errors.o init.o memory.o objects.o sync.o ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/automerge/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/automerge/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/automerge/src' installing to /data/gannet/ripley/R/packages/tests-clang/automerge.Rcheck/00LOCK-automerge/00new/automerge/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (automerge)