* installing *source* package ‘arcpbf’ ...
** this is package ‘arcpbf’ version ‘0.2.0’
** package ‘arcpbf’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.87.0 (99624be96 2025-05-06) (Fedora 1.87.0-2.fc42)
Using rustc 1.87.0 (17067e9ac 2025-05-09) (Fedora 1.87.0-2.fc42)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/arcpbf/src'
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c entrypoint.c -o entrypoint.o
# Check if NOT_CRAN is false and unzip vendor.tar.xz if so
if [ "" != "true" ]; then \
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /data/gannet/ripley/R/packages/tests-clang/arcpbf/src/.cargo && \
cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-clang/arcpbf/src/.cargo/config.toml; \
fi; \
fi
export CARGO_HOME=/data/gannet/ripley/R/packages/tests-clang/arcpbf/src/.cargo && \
export PATH="/usr/local/clang/bin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
package: /data/gannet/ripley/R/packages/tests-clang/arcpbf/src/rust/arcpbf/Cargo.toml
workspace: /data/gannet/ripley/R/packages/tests-clang/arcpbf/src/rust/Cargo.toml
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.94
Compiling unicode-ident v1.0.18
Compiling quote v1.0.40
Compiling syn v2.0.100
Compiling build-print v0.1.1
Compiling anyhow v1.0.97
Compiling extendr-ffi v0.8.0
Compiling autocfg v1.4.0
Compiling either v1.15.0
Compiling itertools v0.12.1
Compiling num-traits v0.2.19
Compiling paste v1.0.15
Compiling prost-derive v0.12.6
Compiling extendr-api v0.8.0
Compiling bytes v1.10.1
Compiling prost v0.12.6
Compiling extendr-macros v0.8.0
Compiling iana-time-zone v0.1.63
Compiling once_cell v1.21.3
Compiling chrono v0.4.40
Compiling esripbf v0.1.0 (/data/gannet/ripley/R/packages/tests-clang/arcpbf/src/rust/esripbf)
Compiling arcpbf v0.1.0 (/data/gannet/ripley/R/packages/tests-clang/arcpbf/src/rust/arcpbf)
note: Link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms.
note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc
Finished `release` profile [optimized] target(s) in 1m 54s
# Always clean up CARGOTMP
rm -Rf /data/gannet/ripley/R/packages/tests-clang/arcpbf/src/.cargo;
/usr/local/clang21/bin/clang -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o arcpbf.so entrypoint.o -L./rust/target/release -larcpbf
rm -Rf /data/gannet/ripley/R/packages/tests-clang/arcpbf/src/.cargo /data/gannet/ripley/R/packages/tests-clang/arcpbf/src/vendor ./rust/target
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/arcpbf/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/arcpbf/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/arcpbf/src'
installing to /data/gannet/ripley/R/packages/tests-clang/arcpbf.Rcheck/00LOCK-arcpbf/00new/arcpbf/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arcpbf)