* installing *source* package ‘apcf’ ... ** package ‘apcf’ successfully unpacked and MD5 sums checked ** using staged installation configure: CC: /usr/local/clang19/bin/clang configure: CXX: /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 checking for geos-config... /usr/bin/geos-config checking geos-config usability... yes configure: GEOS: 3.10.2 checking GEOS version >= 3.4.0... yes checking for gcc... /usr/local/clang19/bin/clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether /usr/local/clang19/bin/clang accepts -g... yes checking for /usr/local/clang19/bin/clang option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for geos_c.h... yes checking geos: linking with -L/usr/lib64 -lgeos_c... yes configure: Package CPP flags: -I/usr/include configure: Package LIBS: -L/usr/lib64 -lgeos_c configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘clang version 19.1.2’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/apcf/src' /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c geos_stuff.cpp -o geos_stuff.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c import_export.cpp -o import_export.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c pcf_envelope.cpp -o pcf_envelope.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rand_dists_ratios.cpp -o rand_dists_ratios.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o apcf.so RcppExports.o geos_stuff.o import_export.o pcf_envelope.o rand_dists_ratios.o -L/usr/lib64 -lgeos_c make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/apcf/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/apcf/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/apcf/src' installing to /data/gannet/ripley/R/packages/tests-clang/apcf.Rcheck/00LOCK-apcf/00new/apcf/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (apcf)