• using R Under development (unstable) (2026-09-22 r90584)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 23.1.1     flang version 23.1.1
• running under: Fedora Linux 44 (Server Edition)
• using session charset: UTF-8 * current time: 2026-09-23 11:34:47 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘amp.sim/DESCRIPTION’ ... OK
• this is package ‘amp.sim’ version ‘0.1.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Packages suggested but not available for checking: 'nonmem2rx', 'rxode2'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘amp.sim’ can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... ERROR Running examples in ‘amp.sim-Ex.R’ failed The error most likely occurred in: > ### Name: convert_nonmem > ### Title: Convert NONMEM model to R syntax > ### Aliases: convert_nonmem > > ### ** Examples > > > mod <- system.file("example_models","PK.1CMT.ORAL.mod", package = "amp.sim") > outf <- tempfile() > > convert_nonmem(mod, outf, verbose = FALSE) > readLines(paste0(outf,".cpp")) |> head(n=15) |> cat(sep="\n") $PLUGIN autodec nm-vars Rcpp $PROB 1 CMT PK model with oral absorption $PARAM THETA1 = 0.1, THETA2 = 2, THETA3 = 1 $CMT A1 A2 $PK  KA = THETA(1) * exp(ETA(1)) ;  CL = THETA(2) * exp(ETA(2)) ;  V = THETA(3) ;  S2 = V ; > > convert_nonmem(mod, outf, verbose = FALSE, type_return = "nonmem2rx") |> suppressMessages() Error in convert_nonmem(mod, outf, verbose = FALSE, type_return = "nonmem2rx") :   the nonmem2rx package should be installed to use this option Calls: suppressMessages -> withCallingHandlers -> convert_nonmem Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [23s/17s] ERROR   Running ‘testthat.R’ [23s/16s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(amp.sim)   >   > test_check("amp.sim")   Saving _problems/test_readconvert-324.R   [ FAIL 1 | WARN 1 | SKIP 1 | PASS 211 ]      ══ Skipped tests (1) ═══════════════════════════════════════════════════════════   • empty test (1): 'test_readconvert.R:217:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_readconvert.R:323:3'): convert_nonmem returns the correctly tranformed model ──   Error in `convert_nonmem(paste0(tdir, "/testmodel.mod"), control = "string", out = paste0(tdir, "/testnm2rx"), overwrite = TRUE, type_return = "nonmem2rx")`: the nonmem2rx package should be installed to use this option   Backtrace:       ▆    1. ├─base::suppressMessages(...) at test_readconvert.R:323:3    2. │ └─base::withCallingHandlers(...)    3. └─amp.sim::convert_nonmem(...)      [ FAIL 1 | WARN 1 | SKIP 1 | PASS 211 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [30s/32s] OK
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs