• using R Under development (unstable) (2026-01-13 r89301)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.8     flang version 21.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘admiralmetabolic/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘admiralmetabolic’ version ‘0.2.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘admiralmetabolic’ can be installed ... [11s/24s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
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• checking foreign function calls ... OK
• checking R code for possible problems ... [14s/39s] OK
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• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
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• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... ERROR Running examples in ‘admiralmetabolic-Ex.R’ failed The error most likely occurred in: > ### Name: derive_param_waisthgt > ### Title: Adds a Parameter for Waist to Height Ratio > ### Aliases: derive_param_waisthgt > ### Keywords: der_prm_advs > > ### ** Examples > > library(tibble) > library(rlang) > > # Example 1: Derive Waist to Height Ratio where Height is measured only once > > advs <- tribble( + ~USUBJID, ~PARAMCD, ~PARAM, ~AVAL, ~AVALU, ~VISIT, + "01-101-1001", "HEIGHT", "Height (cm)", 147, "cm", "SCREENING", + "01-101-1001", "WSTCIR", "Waist Circumference (cm)", 110, "cm", "SCREENING", + "01-101-1001", "WSTCIR", "Waist Circumference (cm)", 108, "cm", "WEEK 2", + "01-101-1001", "WSTCIR", "Waist Circumference (cm)", 107, "cm", "WEEK 3", + "01-101-1002", "HEIGHT", "Height (cm)", 163, "cm", "SCREENING", + "01-101-1002", "WSTCIR", "Waist Circumference (cm)", 120, "cm", "SCREENING", + "01-101-1002", "WSTCIR", "Waist Circumference (cm)", 118, "cm", "WEEK 2", + "01-101-1002", "WSTCIR", "Waist Circumference (cm)", 117, "cm", "WEEK 3", + ) > > derive_param_waisthgt( + advs, + by_vars = exprs(USUBJID, VISIT), + wstcir_code = "WSTCIR", + height_code = "HEIGHT", + set_values_to = exprs( + PARAMCD = "WAISTHGT", + PARAM = "Waist to Height Ratio" + ), + constant_by_vars = exprs(USUBJID), + get_unit_expr = admiral::extract_unit(PARAM) + ) Error in inner_join(hori_data, hori_const_data, by = vars2chr(constant_by_vars)) :   could not find function "inner_join" Calls: derive_param_waisthgt -> derive_param_ratio -> derive_param_computed Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [13s/32s] ERROR   Running ‘testthat.R’ [12s/30s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat) # nolint: undesirable_function_linter   > library(admiralmetabolic) # nolint: undesirable_function_linter   >   > test_check("admiralmetabolic")   Saving _problems/test-derive_param_ratio-77.R   Saving _problems/test-derive_param_ratio-127.R   i Unit conversion performed for "HIPCIR". Values converted from "in" to "cm".   Saving _problems/test-derive_param_waisthgt-26.R   i Unit conversion performed for "HEIGHT". Values converted from "cm" to "in".   Saving _problems/test-derive_param_waisthgt-123.R   i Unit conversion performed for "HIPCIR". Values converted from "cm" to "in".   [ FAIL 4 | WARN 0 | SKIP 0 | PASS 9 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-derive_param_ratio.R:66:5'): derive_param_computed Test 2: Cross-check with derive_param_computed(),     new observations with constant denominator ──   Error in `inner_join(hori_data, hori_const_data, by = vars2chr(constant_by_vars))`: could not find function "inner_join"   Backtrace:       ▆    1. └─admiralmetabolic:::derive_param_ratio(...) at test-derive_param_ratio.R:66:5    2. └─admiral::derive_param_computed(...)   ── Error ('test-derive_param_ratio.R:116:5'): derive_param_computed Test 3: Cross-check with derive_param_computed(),     new observations with constant numerator ──   Error in `inner_join(hori_data, hori_const_data, by = vars2chr(constant_by_vars))`: could not find function "inner_join"   Backtrace:       ▆    1. └─admiralmetabolic:::derive_param_ratio(...) at test-derive_param_ratio.R:116:5    2. └─admiral::derive_param_computed(...)   ── Error ('test-derive_param_waisthgt.R:17:5'): derive_param_waisthgt Test 1: Cross-check with admiral::derive_param_computed(),     new observations with constant Height ──   Error in `inner_join(hori_data, hori_const_data, by = vars2chr(constant_by_vars))`: could not find function "inner_join"   Backtrace:       ▆    1. └─admiralmetabolic::derive_param_waisthgt(...) at test-derive_param_waisthgt.R:17:5    2. └─admiralmetabolic:::derive_param_ratio(...)    3. └─admiral::derive_param_computed(...)   ── Error ('test-derive_param_waisthgt.R:113:5'): derive_param_waisthgt Test 3: Cross-check with and without units conversion ──   Error in `inner_join(hori_data, hori_const_data, by = vars2chr(constant_by_vars))`: could not find function "inner_join"   Backtrace:       ▆    1. ├─... %>% filter(PARAMCD == "WAISTHGT") at test-derive_param_waisthgt.R:113:5    2. ├─dplyr::filter(., PARAMCD == "WAISTHGT")    3. └─admiralmetabolic::derive_param_waisthgt(...)    4. └─admiralmetabolic:::derive_param_ratio(...)    5. └─admiral::derive_param_computed(...)      [ FAIL 4 | WARN 0 | SKIP 0 | PASS 9 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [30s/44s] OK
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs