* installing *source* package ‘adapt3’ ... ** this is package ‘adapt3’ version ‘1.0.1’ ** package ‘adapt3’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 20.1.8’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/adapt3/src' clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/lefko3/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -I../inst/include/ -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/lefko3/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -I../inst/include/ -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c projection.cpp -o projection.o clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/lefko3/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -I../inst/include/ -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c utilities.cpp -o utilities.o projection.cpp:5571:8: warning: variable 'pure_fleslie' set but not used [-Wunused-but-set-variable] 5571 | bool pure_fleslie {false}; // Are all function-based MPMs Leslie MPMs? | ^ projection.cpp:5576:7: warning: variable 'stageframe_count' set but not used [-Wunused-but-set-variable] 5576 | int stageframe_count {0}; | ^ projection.cpp:5577:7: warning: variable 'stageframe_notNull_count' set but not used [-Wunused-but-set-variable] 5577 | int stageframe_notNull_count {0}; | ^ projection.cpp:5578:7: warning: variable 'supplement_count' set but not used [-Wunused-but-set-variable] 5578 | int supplement_count {0}; | ^ projection.cpp:5579:7: warning: variable 'equivalence_count' set but not used [-Wunused-but-set-variable] 5579 | int equivalence_count {0}; | ^ projection.cpp:5580:7: warning: variable 'start_count' set but not used [-Wunused-but-set-variable] 5580 | int start_count {0}; | ^ projection.cpp:5581:7: warning: variable 'tweights_count' set but not used [-Wunused-but-set-variable] 5581 | int tweights_count {0}; | ^ projection.cpp:5582:7: warning: variable 'density_count' set but not used [-Wunused-but-set-variable] 5582 | int density_count {0}; | ^ projection.cpp:5583:7: warning: variable 'entry_time_count' set but not used [-Wunused-but-set-variable] 5583 | int entry_time_count {0}; | ^ projection.cpp:5584:7: warning: variable 'density_vr_count' set but not used [-Wunused-but-set-variable] 5584 | int density_vr_count {0}; | ^ projection.cpp:5585:7: warning: variable 'sparse_vec_count' set but not used [-Wunused-but-set-variable] 5585 | int sparse_vec_count {0}; | ^ projection.cpp:5586:7: warning: variable 'found_fleslie' set but not used [-Wunused-but-set-variable] 5586 | int found_fleslie {0}; | ^ projection.cpp:16582:7: warning: unused variable 'stageframe_count' [-Wunused-variable] 16582 | int stageframe_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:16583:7: warning: variable 'stageframe_notNull_count' set but not used [-Wunused-but-set-variable] 16583 | int stageframe_notNull_count {0}; | ^ projection.cpp:16584:7: warning: unused variable 'supplement_count' [-Wunused-variable] 16584 | int supplement_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:16585:7: warning: variable 'equivalence_count' set but not used [-Wunused-but-set-variable] 16585 | int equivalence_count {0}; | ^ projection.cpp:16586:7: warning: variable 'start_count' set but not used [-Wunused-but-set-variable] 16586 | int start_count {0}; | ^ projection.cpp:16587:7: warning: variable 'tweights_count' set but not used [-Wunused-but-set-variable] 16587 | int tweights_count {0}; | ^ projection.cpp:16588:7: warning: variable 'density_count' set but not used [-Wunused-but-set-variable] 16588 | int density_count {0}; | ^ projection.cpp:16590:7: warning: variable 'entry_time_count' set but not used [-Wunused-but-set-variable] 16590 | int entry_time_count {0}; | ^ projection.cpp:16591:7: warning: variable 'density_vr_count' set but not used [-Wunused-but-set-variable] 16591 | int density_vr_count {0}; | ^ projection.cpp:16592:7: warning: variable 'sparse_vec_count' set but not used [-Wunused-but-set-variable] 16592 | int sparse_vec_count {0}; | ^ projection.cpp:16604:8: warning: variable 'prebreeding_bool' set but not used [-Wunused-but-set-variable] 16604 | bool prebreeding_bool {true}; | ^ 23 warnings generated. clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o adapt3.so RcppExports.o projection.o utilities.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/adapt3/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/adapt3/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/adapt3/src' installing to /data/gannet/ripley/R/packages/tests-clang/adapt3.Rcheck/00LOCK-adapt3/00new/adapt3/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adapt3)