* installing *source* package ‘a5R’ ...
** this is package ‘a5R’ version ‘0.2.0’
** package ‘a5R’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.93.1 (083ac5135 2025-12-15) (Fedora 1.93.1-1.fc42)
Using rustc 1.93.1 (01f6ddf75 2026-02-11) (Fedora 1.93.1-1.fc42)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘clang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/a5R/src'
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
	tar xf rust/vendor.tar.xz && \
	mkdir -p /data/gannet/ripley/R/packages/tests-clang/a5R/src/.cargo && \
	cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-clang/a5R/src/.cargo/config.toml; \
fi
export CARGO_HOME=/data/gannet/ripley/R/packages/tests-clang/a5R/src/.cargo && \
export PATH="/usr/local/clang/bin:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target 
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
   Compiling libm v0.2.16
   Compiling proc-macro2 v1.0.106
   Compiling autocfg v1.5.0
   Compiling unicode-ident v1.0.24
   Compiling quote v1.0.44
   Compiling libc v0.2.182
   Compiling heapless v0.8.0
   Compiling byteorder v1.5.0
   Compiling zerocopy v0.8.39
   Compiling crossbeam-utils v0.8.21
   Compiling stable_deref_trait v1.2.1
   Compiling cfg-if v1.0.4
   Compiling smallvec v1.15.1
   Compiling extendr-ffi v0.8.1
   Compiling rayon-core v1.13.0
   Compiling paste v1.0.15
   Compiling thiserror v1.0.69
   Compiling log v0.4.29
   Compiling i_tree v0.16.0
   Compiling i_key_sort v0.6.0
   Compiling extendr-api v0.8.1
   Compiling hash32 v0.3.1
   Compiling lazy_static v1.5.0
   Compiling either v1.15.0
   Compiling float_next_after v1.0.0
   Compiling once_cell v1.21.3
   Compiling sif-itree v0.4.0
   Compiling robust v1.2.0
   Compiling a5 v0.7.0
   Compiling num-traits v0.2.19
   Compiling crossbeam-epoch v0.9.18
   Compiling syn v2.0.116
   Compiling crossbeam-deque v0.8.6
   Compiling getrandom v0.2.17
   Compiling i_float v1.15.0
   Compiling geographiclib-rs v0.2.7
   Compiling rand_core v0.6.4
   Compiling i_shape v1.14.0
   Compiling rayon v1.11.0
   Compiling i_overlay v4.0.7
   Compiling approx v0.5.1
   Compiling rstar v0.12.2
   Compiling geo-types v0.7.18
   Compiling geo-traits v0.3.0
   Compiling thiserror-impl v1.0.69
   Compiling extendr-macros v0.8.1
   Compiling wkt v0.14.0
   Compiling ppv-lite86 v0.2.21
   Compiling rand_chacha v0.3.1
   Compiling rand v0.8.5
   Compiling geo v0.32.0
   Compiling a5R v0.1.0 (/data/gannet/ripley/R/packages/tests-clang/a5R/src/rust)
warning: crate `a5R` should have a snake case name
  |
  = help: convert the identifier to snake case: `a5_r`
  = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default

note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms.

note: native-static-libs: -lc -lm -lrt -lpthread -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc

warning: `a5R` (lib) generated 1 warning
    Finished `release` profile [optimized] target(s) in 3m 58s
# Always clean up CARGOTMP
rm -Rf /data/gannet/ripley/R/packages/tests-clang/a5R/src/.cargo;
clang-22 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o a5R.so entrypoint.o -L./rust/target/release -la5R
rm -Rf /data/gannet/ripley/R/packages/tests-clang/a5R/src/.cargo /data/gannet/ripley/R/packages/tests-clang/a5R/src/vendor ./rust/target
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/a5R/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/a5R/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/a5R/src'
installing to /data/gannet/ripley/R/packages/tests-clang/a5R.Rcheck/00LOCK-a5R/00new/a5R/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (a5R)