- using R Under development (unstable) (2025-11-06 r88990)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 21.1.5
flang version 21.1.5
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘WeightedCluster/DESCRIPTION’ ... OK
- this is package ‘WeightedCluster’ version ‘1.8-1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘WeightedCluster’ can be installed ... [35s/25s] OK
See the install log for details.
- used C compiler: ‘clang version 21.1.5’
- used C++ compiler: ‘clang version 21.1.5’
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [20s/20s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [56s/57s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... OK
Running ‘onecluster.R’
Running ‘typic_analysis.R’
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [6m/12m] WARNING
Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘BigDataSA.Rmd’
--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘ClusterExternalValidSA.Rmd’
--- re-building ‘ClusterValidSA.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘ClusterValidSA.Rmd’
--- re-building ‘FuzzySA.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘FuzzySA.Rmd’
--- re-building ‘WeightedCluster.Rnw’ using knitr
--- finished re-building ‘WeightedCluster.Rnw’
--- re-building ‘WeightedClusterFR.Rnw’ using knitr
Error: processing vignette 'WeightedClusterFR.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'WeightedClusterFR.tex' failed.
LaTeX errors:
! Undefined control sequence.
\__hook begindocument ...fter {\bbl@main@language
}\ifbbl@single \renewcomma...
l.135 \begin{document}
! Emergency stop.
\__hook begindocument ...fter {\bbl@main@language
}\ifbbl@single \renewcomma...
l.135 \begin{document}
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘WeightedClusterFR.Rnw’
--- re-building ‘WeightedClusterPreview.Rnw’ using knitr
--- finished re-building ‘WeightedClusterPreview.Rnw’
SUMMARY: processing the following file failed:
‘WeightedClusterFR.Rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 WARNING