* installing *source* package ‘VGAM’ ...
** this is package ‘VGAM’ version ‘1.1-14’
** package ‘VGAM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)’
using Fortran compiler: ‘flang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/VGAM/src'
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c VGAM_init.c -o VGAM_init.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c caqo3.c -o caqo3.o
flang-22 -fpic -O2 -pedantic -c ei.f -o ei.o
./ei.f:127:14: warning: Value of uninitialized local variable 'a' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^
./ei.f:127:20: warning: Value of uninitialized local variable 'b' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^
./ei.f:127:22: warning: Value of uninitialized local variable 'c' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^
./ei.f:127:24: warning: Value of uninitialized local variable 'd' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^
./ei.f:127:26: warning: Value of uninitialized local variable 'exp40' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^^^^^
./ei.f:127:32: warning: Value of uninitialized local variable 'e' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^
./ei.f:127:37: warning: Value of uninitialized local variable 'f' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^
./ei.f:127:39: warning: Value of uninitialized local variable 'four' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^^^^
./ei.f:127:44: warning: Value of uninitialized local variable 'fourty' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^^^^^^
./ei.f:127:56: warning: Value of uninitialized local variable 'half' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^^^^
./ei.f:127:61: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^^^
./ei.f:127:65: warning: Value of uninitialized local variable 'p' is used but never defined [-Wused-undefined-variable]
1 A,ARG,B,C,D,EXP40,E,EI,F,FOUR,FOURTY,FRAC,HALF,ONE,P,
^
./ei.f:128:14: warning: Value of uninitialized local variable 'plg' is used but never defined [-Wused-undefined-variable]
2 PLG,PX,P037,P1,P2,Q,QLG,QX,Q1,Q2,R,RESULT,S,SIX,SUMP,
^^^
./ei.f:128:21: warning: Value of uninitialized local variable 'p037' is used but never defined [-Wused-undefined-variable]
2 PLG,PX,P037,P1,P2,Q,QLG,QX,Q1,Q2,R,RESULT,S,SIX,SUMP,
^^^^
./ei.f:128:26: warning: Value of uninitialized local variable 'p1' is used but never defined [-Wused-undefined-variable]
2 PLG,PX,P037,P1,P2,Q,QLG,QX,Q1,Q2,R,RESULT,S,SIX,SUMP,
^^
./ei.f:128:29: warning: Value of uninitialized local variable 'p2' is used but never defined [-Wused-undefined-variable]
2 PLG,PX,P037,P1,P2,Q,QLG,QX,Q1,Q2,R,RESULT,S,SIX,SUMP,
^^
./ei.f:128:32: warning: Value of uninitialized local variable 'q' is used but never defined [-Wused-undefined-variable]
2 PLG,PX,P037,P1,P2,Q,QLG,QX,Q1,Q2,R,RESULT,S,SIX,SUMP,
^
./ei.f:128:34: warning: Value of uninitialized local variable 'qlg' is used but never defined [-Wused-undefined-variable]
2 PLG,PX,P037,P1,P2,Q,QLG,QX,Q1,Q2,R,RESULT,S,SIX,SUMP,
^^^
./ei.f:128:41: warning: Value of uninitialized local variable 'q1' is used but never defined [-Wused-undefined-variable]
2 PLG,PX,P037,P1,P2,Q,QLG,QX,Q1,Q2,R,RESULT,S,SIX,SUMP,
^^
./ei.f:128:44: warning: Value of uninitialized local variable 'q2' is used but never defined [-Wused-undefined-variable]
2 PLG,PX,P037,P1,P2,Q,QLG,QX,Q1,Q2,R,RESULT,S,SIX,SUMP,
^^
./ei.f:128:47: warning: Value of uninitialized local variable 'r' is used but never defined [-Wused-undefined-variable]
2 PLG,PX,P037,P1,P2,Q,QLG,QX,Q1,Q2,R,RESULT,S,SIX,SUMP,
^
./ei.f:128:56: warning: Value of uninitialized local variable 's' is used but never defined [-Wused-undefined-variable]
2 PLG,PX,P037,P1,P2,Q,QLG,QX,Q1,Q2,R,RESULT,S,SIX,SUMP,
^
./ei.f:128:58: warning: Value of uninitialized local variable 'six' is used but never defined [-Wused-undefined-variable]
2 PLG,PX,P037,P1,P2,Q,QLG,QX,Q1,Q2,R,RESULT,S,SIX,SUMP,
^^^
./ei.f:129:21: warning: Value of uninitialized local variable 'three' is used but never defined [-Wused-undefined-variable]
3 SUMQ,T,THREE,TWELVE,TWO,TWO4,W,X,XBIG,XINF,XMAX,XMX0,
^^^^^
./ei.f:129:27: warning: Value of uninitialized local variable 'twelve' is used but never defined [-Wused-undefined-variable]
3 SUMQ,T,THREE,TWELVE,TWO,TWO4,W,X,XBIG,XINF,XMAX,XMX0,
^^^^^^
./ei.f:129:34: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
3 SUMQ,T,THREE,TWELVE,TWO,TWO4,W,X,XBIG,XINF,XMAX,XMX0,
^^^
./ei.f:129:38: warning: Value of uninitialized local variable 'two4' is used but never defined [-Wused-undefined-variable]
3 SUMQ,T,THREE,TWELVE,TWO,TWO4,W,X,XBIG,XINF,XMAX,XMX0,
^^^^
./ei.f:129:47: warning: Value of uninitialized local variable 'xbig' is used but never defined [-Wused-undefined-variable]
3 SUMQ,T,THREE,TWELVE,TWO,TWO4,W,X,XBIG,XINF,XMAX,XMX0,
^^^^
./ei.f:129:52: warning: Value of uninitialized local variable 'xinf' is used but never defined [-Wused-undefined-variable]
3 SUMQ,T,THREE,TWELVE,TWO,TWO4,W,X,XBIG,XINF,XMAX,XMX0,
^^^^
./ei.f:129:57: warning: Value of uninitialized local variable 'xmax' is used but never defined [-Wused-undefined-variable]
3 SUMQ,T,THREE,TWELVE,TWO,TWO4,W,X,XBIG,XINF,XMAX,XMX0,
^^^^
./ei.f:130:14: warning: Value of uninitialized local variable 'x0' is used but never defined [-Wused-undefined-variable]
4 X0,X01,X02,X11,Y,YSQ,ZERO
^^
./ei.f:130:17: warning: Value of uninitialized local variable 'x01' is used but never defined [-Wused-undefined-variable]
4 X0,X01,X02,X11,Y,YSQ,ZERO
^^^
./ei.f:130:21: warning: Value of uninitialized local variable 'x02' is used but never defined [-Wused-undefined-variable]
4 X0,X01,X02,X11,Y,YSQ,ZERO
^^^
./ei.f:130:25: warning: Value of uninitialized local variable 'x11' is used but never defined [-Wused-undefined-variable]
4 X0,X01,X02,X11,Y,YSQ,ZERO
^^^
./ei.f:130:35: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
4 X0,X01,X02,X11,Y,YSQ,ZERO
^^^^
flang-22 -fpic -O2 -pedantic -c fgam.f -o fgam.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gautr.c -o gautr.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c lerchphi.c -o lerchphi.o
flang-22 -fpic -O2 -pedantic -c lms.f -o lms.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c muxr3.c -o muxr3.o
flang-22 -fpic -O2 -pedantic -c rgam.f -o rgam.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rgam3.c -o rgam3.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c specfun3.c -o specfun3.o
flang-22 -fpic -O2 -pedantic -c tyeepolygamma.f -o tyeepolygamma.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tyeepolygamma3.c -o tyeepolygamma3.o
flang-22 -fpic -O2 -pedantic -c vdigami.f -o vdigami.o
./vdigami.f:42:52: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION PN(6), D(6), DP(6), DPP(6), ZERO, ONE, TWO
^^^^
./vdigami.f:42:58: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION PN(6), D(6), DP(6), DPP(6), ZERO, ONE, TWO
^^^
./vdigami.f:42:63: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION PN(6), D(6), DP(6), DPP(6), ZERO, ONE, TWO
^^^
./vdigami.f:49:12: warning: Value of uninitialized local variable 'e' is used but never defined [-Wused-undefined-variable]
DATA E, OFLO, VSMALL/1.E-6, 1.E30, 1.E-30/
^
./vdigami.f:49:15: warning: Value of uninitialized local variable 'oflo' is used but never defined [-Wused-undefined-variable]
DATA E, OFLO, VSMALL/1.E-6, 1.E30, 1.E-30/
^^^^
./vdigami.f:49:21: warning: Value of uninitialized local variable 'vsmall' is used but never defined [-Wused-undefined-variable]
DATA E, OFLO, VSMALL/1.E-6, 1.E30, 1.E-30/
^^^^^^
flang-22 -fpic -O2 -pedantic -c veigen.f -o veigen.o
flang-22 -fpic -O2 -pedantic -c vgam.f -o vgam.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vgam3.c -o vgam3.o
flang-22 -fpic -O2 -pedantic -c vlinpack1.f -o vlinpack1.o
flang-22 -fpic -O2 -pedantic -c vlinpack2.f -o vlinpack2.o
./vlinpack2.f:17:33: warning: Value of uninitialized local variable 'cutlo' is used but never defined [-Wused-undefined-variable]
double precision dx(ldx), cutlo, cuthi, hitest, sum
^^^^^
./vlinpack2.f:17:40: warning: Value of uninitialized local variable 'cuthi' is used but never defined [-Wused-undefined-variable]
double precision dx(ldx), cutlo, cuthi, hitest, sum
^^^^^
./vlinpack2.f:18:29: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
double precision xmax,zero,one
^^^^
./vlinpack2.f:18:34: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
double precision xmax,zero,one
^^^
flang-22 -fpic -O2 -pedantic -c vlinpack3.f -o vlinpack3.o
./vlinpack3.f:164:35: warning: Value of uninitialized local variable 'cutlo' is used but never defined [-Wused-undefined-variable]
double precision dx(ldx), cutlo, cuthi, hitest, sum,
^^^^^
./vlinpack3.f:164:42: warning: Value of uninitialized local variable 'cuthi' is used but never defined [-Wused-undefined-variable]
double precision dx(ldx), cutlo, cuthi, hitest, sum,
^^^^^
./vlinpack3.f:165:31: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
* xmax,zero,one
^^^^
./vlinpack3.f:165:36: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
* xmax,zero,one
^^^
flang-22 -fpic -O2 -pedantic -c vmux.f -o vmux.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vmux3.c -o vmux3.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c zeta3.c -o zeta3.o
clang-22 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o VGAM.so VGAM_init.o caqo3.o ei.o fgam.o gautr.o lerchphi.o lms.o muxr3.o rgam.o rgam3.o specfun3.o tyeepolygamma.o tyeepolygamma3.o vdigami.o veigen.o vgam.o vgam3.o vlinpack1.o vlinpack2.o vlinpack3.o vmux.o vmux3.o zeta3.o -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/VGAM/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/VGAM/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/VGAM/src'
installing to /data/gannet/ripley/R/packages/tests-clang/VGAM.Rcheck/00LOCK-VGAM/00new/VGAM/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (VGAM)