* installing *source* package ‘UComp’ ...
** this is package ‘UComp’ version ‘5.1.1’
** package ‘UComp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 21.1.2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/UComp/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c UCompC.cpp -o UCompC.o
In file included from UCompC.cpp:6:
In file included from ./BSMmodel.h:19:
./SSpace.h:578:10: warning: 'is_finite<arma::subview<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
578 | if (!is_finite(data->y.row(t))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:178:3: note: 'is_finite<arma::subview<double>>' has been explicitly marked deprecated here
178 | [[deprecated("change arma::is_finite(X) to X.is_finite()")]]
| ^
In file included from UCompC.cpp:6:
In file included from ./BSMmodel.h:19:
./SSpace.h:713:13: warning: 'is_finite<arma::subview<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
713 | miss = !is_finite(data->y.row(t));
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:178:3: note: 'is_finite<arma::subview<double>>' has been explicitly marked deprecated here
178 | [[deprecated("change arma::is_finite(X) to X.is_finite()")]]
| ^
In file included from UCompC.cpp:6:
In file included from ./BSMmodel.h:19:
./SSpace.h:849:12: warning: 'is_finite<arma::subview<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
849 | if (!is_finite(data->y.row(t))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:178:3: note: 'is_finite<arma::subview<double>>' has been explicitly marked deprecated here
178 | [[deprecated("change arma::is_finite(X) to X.is_finite()")]]
| ^
In file included from UCompC.cpp:6:
In file included from ./BSMmodel.h:19:
./SSpace.h:1032:10: warning: 'is_finite<arma::subview<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
1032 | if (!is_finite(data.y.row(t))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:178:3: note: 'is_finite<arma::subview<double>>' has been explicitly marked deprecated here
178 | [[deprecated("change arma::is_finite(X) to X.is_finite()")]]
| ^
In file included from UCompC.cpp:6:
In file included from ./BSMmodel.h:19:
./SSpace.h:1128:11: warning: 'is_finite<arma::subview<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
1128 | if (is_finite(data.y.row(t))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:178:3: note: 'is_finite<arma::subview<double>>' has been explicitly marked deprecated here
178 | [[deprecated("change arma::is_finite(X) to X.is_finite()")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1008:17: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1008 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1037:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1037 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1048:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1048 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1061:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1061 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1074:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1074 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1088:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1088 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1113:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1113 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1121:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1121 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1131:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1131 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1141:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1141 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1153:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1153 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1165:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1165 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1177:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1177 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1196:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1196 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
In file included from UCompC.cpp:7:
./ETSmodel.h:1209:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1209 | if (is_finite(m->comp(t, 1))){
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
20 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o UComp.so RcppExports.o UCompC.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/UComp/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/UComp/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/UComp/src'
installing to /data/gannet/ripley/R/packages/tests-clang/UComp.Rcheck/00LOCK-UComp/00new/UComp/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (UComp)