- using R Under development (unstable) (2024-10-01 r87205)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 19.1.0
flang-new version 19.1.0
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘TIMP/DESCRIPTION’ ... OK
- this is package ‘TIMP’ version ‘1.13.6’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘TIMP’ can be installed ... [34s/71s] OK
See the install log for details.
- used C compiler: ‘clang version 19.1.0’
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [63s/124s] OK
- checking Rd files ... NOTE
checkRd: (-1) dat-class.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:133-134: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:135-136: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:137: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:138: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:139-141: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit-class.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit-class.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:23-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:40-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:46-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:54-68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:69-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:76-77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:80-90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:87-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:91-99: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:95: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:97-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:100-120: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:104-105: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:106-107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:108-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:110-112: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:114-115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:116-117: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:118-119: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:121-124: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:139-141: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitModel.Rd:142-144: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitModel.Rd:145-147: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitModel.Rd:148-149: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kinopt-class.Rd:22-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kinopt-class.Rd:30-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kinopt-class.Rd:34-36: Lost braces in \itemize; meant \describe ?
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [5s/10s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [46s/89s] OK
Running ‘example2nd.R’
Running ‘kin_sim_large_script.R’ [7s/15s]
Running ‘kin_simple_ir_script.R’
Running ‘kin_simple_visible_script.R’ [15s/29s]
Running ‘kin_target_script.R’ [6s/10s]
Running ‘spectral_script.R’ [9s/19s]
- checking PDF version of manual ... [14s/30s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 NOTE