* installing *source* package ‘TFMPvalue’ ...
** this is package ‘TFMPvalue’ version ‘0.0.9’
** package ‘TFMPvalue’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.6’
using C++ compiler: ‘clang version 21.1.6’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/TFMPvalue/src'
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c ArgumentException.cpp -o ArgumentException.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c FileException.cpp -o FileException.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Matrix.cpp -o Matrix.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c ParseException.cpp -o ParseException.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c TFMMain.cpp -o TFMMain.o
TFMMain.cpp:79:13: warning: variable 'totalSize' set but not used [-Wunused-but-set-variable]
   79 |   qlonglong totalSize = 0;
      |             ^
TFMMain.cpp:80:13: warning: variable 'totalOp' set but not used [-Wunused-but-set-variable]
   80 |   qlonglong totalOp = 0;
      |             ^
TFMMain.cpp:159:8: warning: unused variable 'sortColumns' [-Wunused-variable]
  159 |   bool sortColumns = false;
      |        ^~~~~~~~~~~
3 warnings generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c TFMPvalue_init.c -o TFMPvalue_init.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c TFMpvalue.cpp -o TFMpvalue.o
TFMpvalue.cpp:119:13: warning: unused variable 'totalSize' [-Wunused-variable]
  119 |   qlonglong totalSize = 0;
      |             ^~~~~~~~~
TFMpvalue.cpp:120:13: warning: unused variable 'totalOp' [-Wunused-variable]
  120 |   qlonglong totalOp = 0;
      |             ^~~~~~~
TFMpvalue.cpp:185:13: warning: unused variable 'totalSize' [-Wunused-variable]
  185 |   qlonglong totalSize = 0;
      |             ^~~~~~~~~
TFMpvalue.cpp:186:13: warning: unused variable 'totalOp' [-Wunused-variable]
  186 |   qlonglong totalOp = 0;
      |             ^~~~~~~
TFMpvalue.cpp:190:10: warning: unused variable 'pvalue' [-Wunused-variable]
  190 |   double pvalue = m.fastPvalue(&m,(qlonglong)(score * m.granularity + m.offset));
      |          ^~~~~~
TFMpvalue.cpp:219:13: warning: variable 'totalSize' set but not used [-Wunused-but-set-variable]
  219 |   qlonglong totalSize = 0;
      |             ^
TFMpvalue.cpp:220:13: warning: variable 'totalOp' set but not used [-Wunused-but-set-variable]
  220 |   qlonglong totalOp = 0;
      |             ^
TFMpvalue.cpp:312:13: warning: variable 'totalSize' set but not used [-Wunused-but-set-variable]
  312 |   qlonglong totalSize;
      |             ^
TFMpvalue.cpp:313:13: warning: variable 'totalOp' set but not used [-Wunused-but-set-variable]
  313 |   qlonglong totalOp;
      |             ^
9 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o TFMPvalue.so ArgumentException.o FileException.o Matrix.o ParseException.o TFMMain.o TFMPvalue_init.o TFMpvalue.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/TFMPvalue/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/TFMPvalue/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/TFMPvalue/src'
installing to /data/gannet/ripley/R/packages/tests-clang/TFMPvalue.Rcheck/00LOCK-TFMPvalue/00new/TFMPvalue/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TFMPvalue)