* installing *source* package ‘SparseChol’ ...
** this is package ‘SparseChol’ version ‘0.3.2’
** package ‘SparseChol’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 21.1.5’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/SparseChol/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/SparseChol.h:3:
In file included from ./../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/SparseChol.h:3:
In file included from ./../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/SparseChol.h:3:
In file included from ./../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/SparseChol.h:3:
In file included from ./../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/SparseChol.h:3:
./../inst/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
145 | int x ;
| ^
./../inst/include/sparsematrix.h:437:10: warning: unused variable 'val' [-Wunused-variable]
437 | double val;
| ^~~
./../inst/include/sparsematrix.h:647:10: warning: unused variable 'mem' [-Wunused-variable]
647 | double mem = 0;
| ^~~
./../inst/include/sparsematrix.h:648:7: warning: unused variable 'nz' [-Wunused-variable]
648 | int nz = Ap.back();
| ^~
./../inst/include/sparsematrix.h:809:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
809 | int ncmpa = 0 ;
| ^
./../inst/include/sparsematrix.h:837:19: warning: unused variable 'ilast' [-Wunused-variable]
837 | int deg, inext, ilast;
| ^~~~~
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/SparseChol.h:4:
./../inst/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
14 | double val;
| ^~~
12 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c chol.cpp -o chol.o
In file included from chol.cpp:1:
In file included from ../inst/include/SparseChol.h:3:
In file included from ../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from chol.cpp:1:
In file included from ../inst/include/SparseChol.h:3:
In file included from ../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from chol.cpp:1:
In file included from ../inst/include/SparseChol.h:3:
In file included from ../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from chol.cpp:1:
In file included from ../inst/include/SparseChol.h:3:
In file included from ../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from chol.cpp:1:
In file included from ../inst/include/SparseChol.h:3:
../inst/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
145 | int x ;
| ^
../inst/include/sparsematrix.h:437:10: warning: unused variable 'val' [-Wunused-variable]
437 | double val;
| ^~~
../inst/include/sparsematrix.h:647:10: warning: unused variable 'mem' [-Wunused-variable]
647 | double mem = 0;
| ^~~
../inst/include/sparsematrix.h:648:7: warning: unused variable 'nz' [-Wunused-variable]
648 | int nz = Ap.back();
| ^~
../inst/include/sparsematrix.h:809:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
809 | int ncmpa = 0 ;
| ^
../inst/include/sparsematrix.h:837:19: warning: unused variable 'ilast' [-Wunused-variable]
837 | int deg, inext, ilast;
| ^~~~~
In file included from chol.cpp:1:
In file included from ../inst/include/SparseChol.h:4:
../inst/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
14 | double val;
| ^~~
chol.cpp:75:7: warning: unused variable 'd' [-Wunused-variable]
75 | int d = chol.ldl_numeric();
| ^
13 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c test.cpp -o test.o
In file included from test.cpp:1:
In file included from ../inst/include/SparseChol.h:3:
In file included from ../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from test.cpp:1:
In file included from ../inst/include/SparseChol.h:3:
In file included from ../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from test.cpp:1:
In file included from ../inst/include/SparseChol.h:3:
In file included from ../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from test.cpp:1:
In file included from ../inst/include/SparseChol.h:3:
In file included from ../inst/include/sparsematrix.h:44:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from test.cpp:1:
In file included from ../inst/include/SparseChol.h:3:
../inst/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
145 | int x ;
| ^
../inst/include/sparsematrix.h:437:10: warning: unused variable 'val' [-Wunused-variable]
437 | double val;
| ^~~
../inst/include/sparsematrix.h:647:10: warning: unused variable 'mem' [-Wunused-variable]
647 | double mem = 0;
| ^~~
../inst/include/sparsematrix.h:648:7: warning: unused variable 'nz' [-Wunused-variable]
648 | int nz = Ap.back();
| ^~
../inst/include/sparsematrix.h:809:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
809 | int ncmpa = 0 ;
| ^
../inst/include/sparsematrix.h:837:19: warning: unused variable 'ilast' [-Wunused-variable]
837 | int deg, inext, ilast;
| ^~~~~
In file included from test.cpp:1:
In file included from ../inst/include/SparseChol.h:4:
../inst/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
14 | double val;
| ^~~
12 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o SparseChol.so RcppExports.o chol.o test.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/SparseChol/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/SparseChol/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/SparseChol/src'
installing to /data/gannet/ripley/R/packages/tests-clang/SparseChol.Rcheck/00LOCK-SparseChol/00new/SparseChol/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SparseChol)