* installing *source* package ‘SPECIES’ ...
** this is package ‘SPECIES’ version ‘1.2.0’
** package ‘SPECIES’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘flang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/SPECIES/src'
flang-22 -fpic -O2 -pedantic -c PPCG.f90 -o PPCG.o
./PPCG.f90:97:20: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 4.999999888241291046142578125e-3_4 is inexact [-Wreal-constant-widening]
Etol=1.D-10;Gtol=0.005;gap=0.02
^^^^^
./PPCG.f90:97:30: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 1.99999995529651641845703125e-2_4 is inexact [-Wreal-constant-widening]
Etol=1.D-10;Gtol=0.005;gap=0.02
^^^^
flang-22 -fpic -O2 -pedantic -c WLunpmle.f90 -o WLunpmle.o
flang-22 -fpic -O2 -pedantic -c norrispollock.f90 -o norrispollock.o
./norrispollock.f90:148:7: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 1.99999995529651641845703125e-2_4 is inexact [-Wreal-constant-widening]
gap=0.02 !! gap defines that if two components differ by <=0.02, they are merged.
^^^^
./norrispollock.f90:150:8: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 4.999999888241291046142578125e-3_4 is inexact [-Wreal-constant-widening]
Gtol=0.005 !! Gtol: VDM-EM converge criterion for the maximum gradient.
^^^^^
flang-22 -fpic -O2 -pedantic -c pnpmle.f90 -o pnpmle.o
flang-22 -fpic -O2 -pedantic -c shared.f90 -o shared.o
./shared.f90:555:20: warning: Value of uninitialized local variable 'c' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION C,&
^
./shared.f90:556:15: warning: Value of uninitialized local variable 'd1' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^
./shared.f90:556:18: warning: Value of uninitialized local variable 'd2' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^
./shared.f90:556:21: warning: Value of uninitialized local variable 'd4' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^
./shared.f90:556:24: warning: Value of uninitialized local variable 'eps' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^^
./shared.f90:556:28: warning: Value of uninitialized local variable 'frtbig' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^^^^^
./shared.f90:556:35: warning: Value of uninitialized local variable 'four' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^^^
./shared.f90:556:40: warning: Value of uninitialized local variable 'half' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^^^
./shared.f90:556:45: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^^
./shared.f90:556:49: warning: Value of uninitialized local variable 'pnt68' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^^^^
./shared.f90:556:55: warning: Value of uninitialized local variable 'p1' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^
./shared.f90:556:58: warning: Value of uninitialized local variable 'p2' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^
./shared.f90:556:61: warning: Value of uninitialized local variable 'p4' is used but never defined [-Wused-undefined-variable]
& CORR,D1,D2,D4,EPS,FRTBIG,FOUR,HALF,ONE,PNT68,P1,P2,P4,&
^^
./shared.f90:557:10: warning: Value of uninitialized local variable 'q1' is used but never defined [-Wused-undefined-variable]
& Q1,Q2,Q4,RES,SQRTPI,THRHAL,TWELVE,TWO,X,XBIG,XDEN,XINF,&
^^
./shared.f90:557:13: warning: Value of uninitialized local variable 'q2' is used but never defined [-Wused-undefined-variable]
& Q1,Q2,Q4,RES,SQRTPI,THRHAL,TWELVE,TWO,X,XBIG,XDEN,XINF,&
^^
./shared.f90:557:16: warning: Value of uninitialized local variable 'q4' is used but never defined [-Wused-undefined-variable]
& Q1,Q2,Q4,RES,SQRTPI,THRHAL,TWELVE,TWO,X,XBIG,XDEN,XINF,&
^^
./shared.f90:557:23: warning: Value of uninitialized local variable 'sqrtpi' is used but never defined [-Wused-undefined-variable]
& Q1,Q2,Q4,RES,SQRTPI,THRHAL,TWELVE,TWO,X,XBIG,XDEN,XINF,&
^^^^^^
./shared.f90:557:30: warning: Value of uninitialized local variable 'thrhal' is used but never defined [-Wused-undefined-variable]
& Q1,Q2,Q4,RES,SQRTPI,THRHAL,TWELVE,TWO,X,XBIG,XDEN,XINF,&
^^^^^^
./shared.f90:557:37: warning: Value of uninitialized local variable 'twelve' is used but never defined [-Wused-undefined-variable]
& Q1,Q2,Q4,RES,SQRTPI,THRHAL,TWELVE,TWO,X,XBIG,XDEN,XINF,&
^^^^^^
./shared.f90:557:44: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
& Q1,Q2,Q4,RES,SQRTPI,THRHAL,TWELVE,TWO,X,XBIG,XDEN,XINF,&
^^^
./shared.f90:557:50: warning: Value of uninitialized local variable 'xbig' is used but never defined [-Wused-undefined-variable]
& Q1,Q2,Q4,RES,SQRTPI,THRHAL,TWELVE,TWO,X,XBIG,XDEN,XINF,&
^^^^
./shared.f90:557:60: warning: Value of uninitialized local variable 'xinf' is used but never defined [-Wused-undefined-variable]
& Q1,Q2,Q4,RES,SQRTPI,THRHAL,TWELVE,TWO,X,XBIG,XDEN,XINF,&
^^^^
./shared.f90:558:33: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
& XM1,XM2,XM4,XNUM,Y,YSQ,ZERO
^^^^
clang-22 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o SPECIES.so PPCG.o WLunpmle.o norrispollock.o pnpmle.o shared.o -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/SPECIES/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/SPECIES/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/SPECIES/src'
installing to /data/gannet/ripley/R/packages/tests-clang/SPECIES.Rcheck/00LOCK-SPECIES/00new/SPECIES/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SPECIES)