* installing *source* package ‘Rmalschains’ ...
** package ‘Rmalschains’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 17.0.5’
using C++ compiler: ‘clang version 17.0.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rmalschains/src'
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c ConfigFile.cc -o ConfigFile.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c RmalschainsWrapper.cpp -o RmalschainsWrapper.o
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c Rmalschains_init.c -o Rmalschains_init.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c bandmat.cpp -o bandmat.o
In file included from RmalschainsWrapper.cpp:6:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c chc.cc -o chc.o
In file included from RmalschainsWrapper.cpp:6:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c cholesky.cpp -o cholesky.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c cmaes.cc -o cmaes.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c cmaesb.cc -o cmaesb.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c cmaeshan.cc -o cmaeshan.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c config.cc -o config.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c cross.cc -o cross.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c de.cc -o de.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c debug.cc -o debug.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c distance.cc -o distance.o
3 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c domain.cc -o domain.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c ea.cc -o ea.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c evalue.cpp -o evalue.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c fft.cpp -o fft.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c get_util.cc -o get_util.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c hholder.cpp -o hholder.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c hybrid.cc -o hybrid.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c hybrid2ph.cc -o hybrid2ph.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c iea.cc -o iea.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c individual.cc -o individual.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c initind.cc -o initind.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c jacobi.cpp -o jacobi.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c jade.cc -o jade.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c jdebin.cc -o jdebin.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c jdelsgo.cc -o jdelsgo.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c jdemc.cc -o jdemc.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c jderand.cc -o jderand.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c localsearch.cc -o localsearch.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c lsparammem.cc -o lsparammem.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c malschains.cc -o malschains.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c mts.cc -o mts.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c mts1.cc -o mts1.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c mts2.cc -o mts2.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c mtsi.cc -o mtsi.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c mutation.cc -o mutation.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c myexcept.cpp -o myexcept.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c newfft.cpp -o newfft.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c newmat1.cpp -o newmat1.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c newmat2.cpp -o newmat2.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c newmat3.cpp -o newmat3.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c newmat4.cpp -o newmat4.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c newmat5.cpp -o newmat5.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c newmat6.cpp -o newmat6.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c newmat7.cpp -o newmat7.o
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/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c orandom.cc -o orandom.o
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/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c populationchc.cc -o populationchc.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c populationjde.cc -o populationjde.o
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/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c populationjderand.cc -o populationjderand.o
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/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c populationreal.cc -o populationreal.o
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/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -c replace.cc -o replace.o
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make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rmalschains/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rmalschains/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rmalschains/src'
installing to /data/gannet/ripley/R/packages/tests-clang/Rmalschains.Rcheck/00LOCK-Rmalschains/00new/Rmalschains/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rmalschains)