* installing *source* package ‘Riemann’ ...
** package ‘Riemann’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Riemann/src'
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c auxiliary.cpp -o auxiliary.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c distribution_grassmann.cpp -o distribution_grassmann.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c distribution_sphere.cpp -o distribution_sphere.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c distribution_spnorm.cpp -o distribution_spnorm.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_01_basic.cpp -o functions_01_basic.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_02_inference.cpp -o functions_02_inference.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_03_clustering.cpp -o functions_03_clustering.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_03_clustering_criteria.cpp -o functions_03_clustering_criteria.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_05_visualization.cpp -o functions_05_visualization.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_06_curve.cpp -o functions_06_curve.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_07_learning.cpp -o functions_07_learning.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_special_others.cpp -o functions_special_others.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions_special_spd.cpp -o functions_special_spd.o
functions_03_clustering.cpp:94:7: warning: unused variable 'nrow' [-Wunused-variable]
94 | int nrow = data.n_rows;
| ^~~~
functions_03_clustering.cpp:95:7: warning: unused variable 'ncol' [-Wunused-variable]
95 | int ncol = data.n_cols;
| ^~~~
functions_03_clustering.cpp:102:8: warning: unused variable 'status' [-Wunused-variable]
102 | bool status = arma::kmeans(means, arma::trans(logvecs), K, random_subset, 50, false);
| ^~~~~~
functions_03_clustering.cpp:596:7: warning: unused variable 'M' [-Wunused-variable]
596 | int M = data.n_slices;
| ^
functions_03_clustering.cpp:597:7: warning: unused variable 'nrow' [-Wunused-variable]
597 | int nrow = data.n_rows;
| ^~~~
functions_03_clustering.cpp:598:7: warning: unused variable 'ncol' [-Wunused-variable]
598 | int ncol = data.n_cols;
| ^~~~
functions_03_clustering_criteria.cpp:27:7: warning: unused variable 'N' [-Wunused-variable]
27 | int N = label.n_elem;
| ^
functions_03_clustering_criteria.cpp:39:7: warning: unused variable 'N' [-Wunused-variable]
39 | int N = X.n_slices;
| ^
functions_03_clustering_criteria.cpp:57:7: warning: unused variable 'nrow' [-Wunused-variable]
57 | int nrow = X.n_rows;
| ^~~~
functions_03_clustering_criteria.cpp:58:7: warning: unused variable 'ncol' [-Wunused-variable]
58 | int ncol = X.n_cols;
| ^~~~
functions_03_clustering_criteria.cpp:246:7: warning: unused variable 'Nw' [-Wunused-variable]
246 | int Nw = cvi_helper_nw(label);
| ^~
functions_07_learning.cpp:124:7: warning: unused variable 'n' [-Wunused-variable]
124 | int n = X.n_rows;
| ^
5 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c riemann_general.cpp -o riemann_general.o
6 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c riemann_src.cpp -o riemann_src.o
1 warning generated.
In file included from riemann_src.cpp:3:
./riemann_manifolds.h:234:7: warning: unused variable 'p' [-Wunused-variable]
234 | int p = X.n_rows;
| ^
./riemann_manifolds.h:259:13: warning: unused variable 'n' [-Wunused-variable]
259 | const int n = x.n_rows;
| ^
./riemann_manifolds.h:278:13: warning: unused variable 'n' [-Wunused-variable]
278 | const int n = U0.n_rows;
| ^
./riemann_manifolds.h:390:13: warning: unused variable 'n' [-Wunused-variable]
390 | const int n = x.n_rows;
| ^
./riemann_manifolds.h:391:13: warning: unused variable 'p' [-Wunused-variable]
391 | const int p = x.n_cols;
| ^
./riemann_manifolds.h:407:7: warning: unused variable 'n' [-Wunused-variable]
407 | int n = x.n_rows;
| ^
riemann_src.cpp:343:7: warning: unused variable 'nrow' [-Wunused-variable]
343 | int nrow = data.n_rows;
| ^~~~
riemann_src.cpp:344:7: warning: unused variable 'ncol' [-Wunused-variable]
344 | int ncol = data.n_cols;
| ^~~~
8 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o Riemann.so RcppExports.o auxiliary.o distribution_grassmann.o distribution_sphere.o distribution_spnorm.o functions_01_basic.o functions_02_inference.o functions_03_clustering.o functions_03_clustering_criteria.o functions_05_visualization.o functions_06_curve.o functions_07_learning.o functions_special_others.o functions_special_spd.o riemann_general.o riemann_src.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Riemann/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Riemann/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Riemann/src'
installing to /data/gannet/ripley/R/packages/tests-clang/Riemann.Rcheck/00LOCK-Riemann/00new/Riemann/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Riemann)