* installing *source* package ‘Rfuzzycoco’ ...
** this is package ‘Rfuzzycoco’ version ‘0.1.0’
** package ‘Rfuzzycoco’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 21.1.5’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rfuzzycoco/src'
OBJECTS=RcppExports.o df_io.o fuzzy_coco_modules.o list_io.o rcpp_fuzzy_coco.o fuzzycoco/src/bitarray.o fuzzycoco/src/coevolution_engine.o fuzzycoco/src/coevolution_fitness.o fuzzycoco/src/crossover_method.o fuzzycoco/src/dataframe.o fuzzycoco/src/evolution_engine.o fuzzycoco/src/file_utils.o fuzzycoco/src/fuzzy_coco.o fuzzycoco/src/fuzzy_coco_codec.o fuzzycoco/src/fuzzy_coco_engine.o fuzzycoco/src/fuzzy_coco_fitness.o fuzzycoco/src/fuzzy_coco_params.o fuzzycoco/src/fuzzy_default_rule.o fuzzycoco/src/fuzzy_rule.o fuzzycoco/src/fuzzy_system.o fuzzycoco/src/fuzzy_system_fitness.o fuzzycoco/src/fuzzy_system_metrics.o fuzzycoco/src/fuzzy_system_metrics_computer.o fuzzycoco/src/fuzzy_variable.o fuzzycoco/src/fuzzy_variables_db.o fuzzycoco/src/genome_codec.o fuzzycoco/src/mutation_method.o fuzzycoco/src/named_list.o fuzzycoco/src/selection_method.o fuzzycoco/src/string_utils.o
SOURCES=RcppExports.cpp df_io.cpp fuzzy_coco_modules.cpp list_io.cpp rcpp_fuzzy_coco.cpp fuzzycoco/src/bitarray.cpp fuzzycoco/src/coevolution_engine.cpp fuzzycoco/src/coevolution_fitness.cpp fuzzycoco/src/crossover_method.cpp fuzzycoco/src/dataframe.cpp fuzzycoco/src/evolution_engine.cpp fuzzycoco/src/file_utils.cpp fuzzycoco/src/fuzzy_coco.cpp fuzzycoco/src/fuzzy_coco_codec.cpp fuzzycoco/src/fuzzy_coco_engine.cpp fuzzycoco/src/fuzzy_coco_fitness.cpp fuzzycoco/src/fuzzy_coco_params.cpp fuzzycoco/src/fuzzy_default_rule.cpp fuzzycoco/src/fuzzy_rule.cpp fuzzycoco/src/fuzzy_system.cpp fuzzycoco/src/fuzzy_system_fitness.cpp fuzzycoco/src/fuzzy_system_metrics.cpp fuzzycoco/src/fuzzy_system_metrics_computer.cpp fuzzycoco/src/fuzzy_variable.cpp fuzzycoco/src/fuzzy_variables_db.cpp fuzzycoco/src/genome_codec.cpp fuzzycoco/src/mutation_method.cpp fuzzycoco/src/named_list.cpp fuzzycoco/src/selection_method.cpp fuzzycoco/src/string_utils.cpp
MY_CXXFLAGS=-fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw
ALL_CXXFLAGS= -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c df_io.cpp -o df_io.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzy_coco_modules.cpp -o fuzzy_coco_modules.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c list_io.cpp -o list_io.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c rcpp_fuzzy_coco.cpp -o rcpp_fuzzy_coco.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/bitarray.cpp -o fuzzycoco/src/bitarray.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/coevolution_engine.cpp -o fuzzycoco/src/coevolution_engine.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/coevolution_fitness.cpp -o fuzzycoco/src/coevolution_fitness.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/crossover_method.cpp -o fuzzycoco/src/crossover_method.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/dataframe.cpp -o fuzzycoco/src/dataframe.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/evolution_engine.cpp -o fuzzycoco/src/evolution_engine.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/file_utils.cpp -o fuzzycoco/src/file_utils.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_coco.cpp -o fuzzycoco/src/fuzzy_coco.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_coco_codec.cpp -o fuzzycoco/src/fuzzy_coco_codec.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_coco_engine.cpp -o fuzzycoco/src/fuzzy_coco_engine.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_coco_fitness.cpp -o fuzzycoco/src/fuzzy_coco_fitness.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_coco_params.cpp -o fuzzycoco/src/fuzzy_coco_params.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_default_rule.cpp -o fuzzycoco/src/fuzzy_default_rule.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_rule.cpp -o fuzzycoco/src/fuzzy_rule.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_system.cpp -o fuzzycoco/src/fuzzy_system.o
fuzzycoco/src/fuzzy_system.cpp:248:13: warning: unused variable 'nb_vars' [-Wunused-variable]
248 | const int nb_vars = getDB().getNbOutputVars();
| ^~~~~~~
fuzzycoco/src/fuzzy_system.cpp:249:13: warning: unused variable 'nb_sets' [-Wunused-variable]
249 | const int nb_sets = getDB().getNbOutputSets();
| ^~~~~~~
fuzzycoco/src/fuzzy_system.cpp:277:16: warning: unused variable 'current_level' [-Wunused-variable]
277 | double current_level = results[var_idx][set_idx];
| ^~~~~~~~~~~~~
3 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_system_fitness.cpp -o fuzzycoco/src/fuzzy_system_fitness.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_system_metrics.cpp -o fuzzycoco/src/fuzzy_system_metrics.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_system_metrics_computer.cpp -o fuzzycoco/src/fuzzy_system_metrics_computer.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_variable.cpp -o fuzzycoco/src/fuzzy_variable.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/fuzzy_variables_db.cpp -o fuzzycoco/src/fuzzy_variables_db.o
fuzzycoco/src/fuzzy_variables_db.cpp:134:13: warning: unused variable 'nbin' [-Wunused-variable]
134 | const int nbin = getNbInputVars();
| ^~~~
fuzzycoco/src/fuzzy_variables_db.cpp:140:13: warning: unused variable 'nbout' [-Wunused-variable]
140 | const int nbout = getNbOutputVars();
| ^~~~~
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/genome_codec.cpp -o fuzzycoco/src/genome_codec.o
2 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/mutation_method.cpp -o fuzzycoco/src/mutation_method.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/named_list.cpp -o fuzzycoco/src/named_list.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/selection_method.cpp -o fuzzycoco/src/selection_method.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ifuzzycoco/src -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fuzzycoco/src/string_utils.cpp -o fuzzycoco/src/string_utils.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o Rfuzzycoco.so RcppExports.o df_io.o fuzzy_coco_modules.o list_io.o rcpp_fuzzy_coco.o fuzzycoco/src/bitarray.o fuzzycoco/src/coevolution_engine.o fuzzycoco/src/coevolution_fitness.o fuzzycoco/src/crossover_method.o fuzzycoco/src/dataframe.o fuzzycoco/src/evolution_engine.o fuzzycoco/src/file_utils.o fuzzycoco/src/fuzzy_coco.o fuzzycoco/src/fuzzy_coco_codec.o fuzzycoco/src/fuzzy_coco_engine.o fuzzycoco/src/fuzzy_coco_fitness.o fuzzycoco/src/fuzzy_coco_params.o fuzzycoco/src/fuzzy_default_rule.o fuzzycoco/src/fuzzy_rule.o fuzzycoco/src/fuzzy_system.o fuzzycoco/src/fuzzy_system_fitness.o fuzzycoco/src/fuzzy_system_metrics.o fuzzycoco/src/fuzzy_system_metrics_computer.o fuzzycoco/src/fuzzy_variable.o fuzzycoco/src/fuzzy_variables_db.o fuzzycoco/src/genome_codec.o fuzzycoco/src/mutation_method.o fuzzycoco/src/named_list.o fuzzycoco/src/selection_method.o fuzzycoco/src/string_utils.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rfuzzycoco/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rfuzzycoco/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rfuzzycoco/src'
installing to /data/gannet/ripley/R/packages/tests-clang/Rfuzzycoco.Rcheck/00LOCK-Rfuzzycoco/00new/Rfuzzycoco/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rfuzzycoco)