* installing *source* package ‘Rcsdp’ ...
** package ‘Rcsdp’ successfully unpacked and MD5 sums checked
** using staged installation
Using bundled CSDP
checking for gcc... /usr/local/clang18/bin/clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether /usr/local/clang18/bin/clang accepts -g... yes
checking for /usr/local/clang18/bin/clang option to enable C11 features... none needed
checking how to run the C preprocessor... /usr/local/clang18/bin/clang -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘clang version 18.1.2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -ICsdp/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -DNOSHORTS -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c Rcsdp.c -o Rcsdp.o
Rcsdp.c:37:10: warning: variable 'nblocks' set but not used [-Wunused-but-set-variable]
37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes;
| ^
Rcsdp.c:37:34: warning: variable 'blocktypes' set but not used [-Wunused-but-set-variable]
37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes;
| ^
Rcsdp.c:37:47: warning: variable 'blocksizes' set but not used [-Wunused-but-set-variable]
37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes;
| ^
Rcsdp.c:230:10: warning: variable 'nblocks' set but not used [-Wunused-but-set-variable]
230 | int n, nblocks, nconstraints, status;
| ^
4 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -ICsdp/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -DNOSHORTS -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c convert.c -o convert.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -ICsdp/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -DNOSHORTS -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c testing.c -o testing.o
(cd Csdp/lib && \
(make libsdp.a CC="/usr/local/clang18/bin/clang" CFLAGS="-O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include" AR="ar" RANLIB="ranlib") && \
touch Csdp.ts)
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src/Csdp/lib'
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o readprob.o readprob.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o sdp.o sdp.c
sdp.c:112:10: warning: variable 'oldmu' set but not used [-Wunused-but-set-variable]
112 | double oldmu;
| ^
sdp.c:129:10: warning: variable 'oldmaxrelinfeas' set but not used [-Wunused-but-set-variable]
129 | double oldmaxrelinfeas=1.0e100;
| ^
sdp.c:130:10: warning: variable 'newpobj' set but not used [-Wunused-but-set-variable]
130 | double newpobj;
| ^
sdp.c:131:10: warning: variable 'newdobj' set but not used [-Wunused-but-set-variable]
131 | double newdobj;
| ^
sdp.c:142:7: warning: variable 'lastimprove' set but not used [-Wunused-but-set-variable]
142 | int lastimprove=0;
| ^
5 warnings generated.
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o op_o.o op_o.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o psd_feas.o psd_feas.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o op_a.o op_a.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o op_at.o op_at.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o Fnorm.o Fnorm.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o calc_pobj.o calc_pobj.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o calc_dobj.o calc_dobj.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o trace_prod.o trace_prod.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o zero_mat.o zero_mat.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o mat_mult.o mat_mult.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o sym_mat.o sym_mat.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o copy_mat.o copy_mat.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o addscaledmat.o addscaledmat.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o user_exit.o user_exit.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o make_i.o make_i.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o allocmat.o allocmat.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o initsoln.o initsoln.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o initparams.o initparams.c
initparams.c:33:11: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
33 | int ret = fscanf(paramfile,"%*[^=]%*c%lf",&(params->axtol));
| ^
1 warning generated.
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o add_mat.o add_mat.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o writesol.o writesol.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o readsol.o readsol.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o easysdp.o easysdp.c
easysdp.c:61:7: warning: variable 'blk' set but not used [-Wunused-but-set-variable]
61 | int blk;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o writeprob.o writeprob.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o solvesys.o solvesys.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o makefill.o makefill.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o mat_multsp.o mat_multsp.c
mat_multsp.c:56:7: warning: unused variable 'total_threads' [-Wunused-variable]
56 | int total_threads;
| ^~~~~~~~~~~~~
mat_multsp.c:57:7: warning: unused variable 'thread_num' [-Wunused-variable]
57 | int thread_num;
| ^~~~~~~~~~
mat_multsp.c:294:7: warning: unused variable 'total_threads' [-Wunused-variable]
294 | int total_threads;
| ^~~~~~~~~~~~~
mat_multsp.c:295:7: warning: unused variable 'thread_num' [-Wunused-variable]
295 | int thread_num;
| ^~~~~~~~~~
4 warnings generated.
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o norms.o norms.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o linesearch.o linesearch.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o matvec.o matvec.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o chol.o chol.c
chol.c:150:10: warning: variable 'scale' set but not used [-Wunused-but-set-variable]
150 | double scale;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o qreig.o qreig.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o tweakgap.o tweakgap.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o freeprob.o freeprob.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o packed.o packed.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -DNOSHORTS -I../include -c -o sortentries.o sortentries.c
ar cr libsdp.a readprob.o sdp.o op_o.o psd_feas.o op_a.o op_at.o Fnorm.o calc_pobj.o calc_dobj.o trace_prod.o zero_mat.o mat_mult.o sym_mat.o copy_mat.o addscaledmat.o user_exit.o make_i.o allocmat.o initsoln.o initparams.o add_mat.o writesol.o readsol.o easysdp.o writeprob.o solvesys.o makefill.o mat_multsp.o norms.o linesearch.o matvec.o chol.o qreig.o tweakgap.o freeprob.o packed.o sortentries.o
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src/Csdp/lib'
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o Rcsdp.so Rcsdp.o convert.o testing.o -LCsdp/lib -lsdp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rcsdp/src'
installing to /data/gannet/ripley/R/packages/tests-clang/Rcsdp.Rcheck/00LOCK-Rcsdp/00new/Rcsdp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcsdp)