* installing *source* package ‘RcppTskit’ ... ** this is package ‘RcppTskit’ version ‘0.2.0’ ** package ‘RcppTskit’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++20 using C compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’ using C++ compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’ using C++20 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RcppTskit/src' clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c tskit/convert.c -o tskit/convert.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c tskit/core.c -o tskit/core.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c tskit/genotypes.c -o tskit/genotypes.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c tskit/haplotype_matching.c -o tskit/haplotype_matching.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c tskit/kastore.c -o tskit/kastore.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c tskit/stats.c -o tskit/stats.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c tskit/tables.c -o tskit/tables.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c tskit/trees.c -o tskit/trees.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tests_c.c -o tests_c.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppTskit.cpp -o RcppTskit.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c tests.cpp -o tests.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/data/gannet/ripley/R/R-clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o RcppTskit.so tskit/convert.o tskit/core.o tskit/genotypes.o tskit/haplotype_matching.o tskit/kastore.o tskit/stats.o tskit/tables.o tskit/trees.o tests_c.o RcppTskit.o tests.o RcppExports.o -Wl,-soname,RcppTskit.so make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RcppTskit/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RcppTskit/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RcppTskit/src' installing to /data/gannet/ripley/R/packages/tests-clang/RcppTskit.Rcheck/00LOCK-RcppTskit/00new/RcppTskit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppTskit)