* installing *source* package ‘RcppHungarian’ ...
** package ‘RcppHungarian’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 17.0.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RcppHungarian/src'
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
./../inst/include/RcppHungarian.h:177:13: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation]
177 | for (row = 0; row<nOfRows; row++)
| ^
./../inst/include/RcppHungarian.h:169:11: note: previous statement is here
169 | if (fabs(distMatrix[row + nOfRows*col]) < DBL_EPSILON)
| ^
./../inst/include/RcppHungarian.h:258:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
258 | if (nOfCoveredColumns == minDim)
| ^
./../inst/include/RcppHungarian.h:254:5: note: previous statement is here
254 | for (col = 0; col<nOfColumns; col++)
| ^
./../inst/include/RcppHungarian.h:292:17: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
292 | if (starCol == nOfColumns) /* no starred zero found */
| ^
./../inst/include/RcppHungarian.h:288:15: note: previous statement is here
288 | for (starCol = 0; starCol<nOfColumns; starCol++)
| ^
./../inst/include/RcppHungarian.h:330:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
330 | while (starRow<nOfRows)
| ^
./../inst/include/RcppHungarian.h:326:5: note: previous statement is here
326 | for (starRow = 0; starRow<nOfRows; starRow++)
| ^
./../inst/include/RcppHungarian.h:342:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
342 | newStarMatrix[primeRow + nOfRows*primeCol] = true;
| ^
./../inst/include/RcppHungarian.h:337:9: note: previous statement is here
337 | for (primeCol = 0; primeCol<nOfColumns; primeCol++)
| ^
./../inst/include/RcppHungarian.h:383:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
383 | for (row = 0; row<nOfRows; row++)
| ^
./../inst/include/RcppHungarian.h:374:9: note: previous statement is here
374 | for (col = 0; col<nOfColumns; col++)
| ^
./../inst/include/RcppHungarian.h:389:13: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
389 | for (col = 0; col<nOfColumns; col++)
| ^
./../inst/include/RcppHungarian.h:383:11: note: previous statement is here
383 | for (row = 0; row<nOfRows; row++)
| ^
./../inst/include/RcppHungarian.h:395:15: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
395 | step3(assignment, distMatrix, starMatrix, newStarMatrix, primeMatrix, coveredColumns, coveredRows, nOfRows, nOfColumns, minDim);
| ^
./../inst/include/RcppHungarian.h:389:13: note: previous statement is here
389 | for (col = 0; col<nOfColumns; col++)
| ^
In file included from RcppExports.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from RcppExports.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c hungarian.cpp -o hungarian.o
11 warnings generated.
In file included from hungarian.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from hungarian.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
In file included from hungarian.cpp:2:
../inst/include/RcppHungarian.h:177:13: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation]
177 | for (row = 0; row<nOfRows; row++)
| ^
../inst/include/RcppHungarian.h:169:11: note: previous statement is here
169 | if (fabs(distMatrix[row + nOfRows*col]) < DBL_EPSILON)
| ^
../inst/include/RcppHungarian.h:258:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
258 | if (nOfCoveredColumns == minDim)
| ^
../inst/include/RcppHungarian.h:254:5: note: previous statement is here
254 | for (col = 0; col<nOfColumns; col++)
| ^
../inst/include/RcppHungarian.h:292:17: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
292 | if (starCol == nOfColumns) /* no starred zero found */
| ^
../inst/include/RcppHungarian.h:288:15: note: previous statement is here
288 | for (starCol = 0; starCol<nOfColumns; starCol++)
| ^
../inst/include/RcppHungarian.h:330:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
330 | while (starRow<nOfRows)
| ^
../inst/include/RcppHungarian.h:326:5: note: previous statement is here
326 | for (starRow = 0; starRow<nOfRows; starRow++)
| ^
../inst/include/RcppHungarian.h:342:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
342 | newStarMatrix[primeRow + nOfRows*primeCol] = true;
| ^
../inst/include/RcppHungarian.h:337:9: note: previous statement is here
337 | for (primeCol = 0; primeCol<nOfColumns; primeCol++)
| ^
../inst/include/RcppHungarian.h:383:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
383 | for (row = 0; row<nOfRows; row++)
| ^
../inst/include/RcppHungarian.h:374:9: note: previous statement is here
374 | for (col = 0; col<nOfColumns; col++)
| ^
../inst/include/RcppHungarian.h:389:13: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
389 | for (col = 0; col<nOfColumns; col++)
| ^
../inst/include/RcppHungarian.h:383:11: note: previous statement is here
383 | for (row = 0; row<nOfRows; row++)
| ^
../inst/include/RcppHungarian.h:395:15: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
395 | step3(assignment, distMatrix, starMatrix, newStarMatrix, primeMatrix, coveredColumns, coveredRows, nOfRows, nOfColumns, minDim);
| ^
../inst/include/RcppHungarian.h:389:13: note: previous statement is here
389 | for (col = 0; col<nOfColumns; col++)
| ^
11 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang17/lib -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o RcppHungarian.so RcppExports.o hungarian.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RcppHungarian/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RcppHungarian/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RcppHungarian/src'
installing to /data/gannet/ripley/R/packages/tests-clang/RcppHungarian.Rcheck/00LOCK-RcppHungarian/00new/RcppHungarian/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppHungarian)