* installing *source* package ‘Rbeast’ ...
** package ‘Rbeast’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rbeast/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c _beastv2_gui_plot.c -o _beastv2_gui_plot.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c _beastv2_gui_winmain.c -o _beastv2_gui_winmain.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_common.c -o abc_common.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_cpu.c -o abc_cpu.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_date.c -o abc_date.o
abc_date.c:677:10: warning: variable 'meanv' set but not used [-Wunused-but-set-variable]
677 | F64 meanv=0;
| ^
abc_date.c:737:10: warning: variable 'meanv' set but not used [-Wunused-but-set-variable]
737 | F64 meanv=0;
| ^
abc_date.c:778:10: warning: variable 'meanv' set but not used [-Wunused-but-set-variable]
778 | F64 meanv=0;
| ^
abc_date.c:828:10: warning: variable 'meanv' set but not used [-Wunused-but-set-variable]
828 | F64 meanv=0;
| ^
4 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_dir.c -o abc_dir.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_ide_util_R.c -o abc_ide_util_R.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_ide_util_common.c -o abc_ide_util_common.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_ide_util_matlab.c -o abc_ide_util_matlab.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_ide_util_python.c -o abc_ide_util_python.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_ioFlush.c -o abc_ioFlush.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_lzw.c -o abc_lzw.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_mat.c -o abc_mat.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_math.c -o abc_math.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_math_avx.c -o abc_math_avx.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_math_avx512.c -o abc_math_avx512.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_mcmc.c -o abc_mcmc.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_mem.c -o abc_mem.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_mem_ext.c -o abc_mem_ext.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_pthread.c -o abc_pthread.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_rand_pcg_global.c -o abc_rand_pcg_global.o
abc_rand_pcg_global.c:128:7: warning: variable 'bingo' set but not used [-Wunused-but-set-variable]
128 | int bingo=0;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_rand_pcg_local.c -o abc_rand_pcg_local.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_rand_pcg_local_avx2.c -o abc_rand_pcg_local_avx2.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_rand_pcg_local_avx512.c -o abc_rand_pcg_local_avx512.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_rand_pcg_local_generic.c -o abc_rand_pcg_local_generic.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_sort.c -o abc_sort.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_svd.c -o abc_svd.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_system.c -o abc_system.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_timer.c -o abc_timer.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_tranpose.c -o abc_tranpose.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_ts_func.c -o abc_ts_func.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_vec.c -o abc_vec.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_vec_avx2.c -o abc_vec_avx2.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_vec_avx512.c -o abc_vec_avx512.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_vec_generic.c -o abc_vec_generic.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c abc_win32_demo.c -o abc_win32_demo.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_COREV4.c -o beastv2_COREV4.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_COREV4_bic.c -o beastv2_COREV4_bic.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_COREV4_bic_mthrd.c -o beastv2_COREV4_bic_mthrd.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_COREV4_gui.c -o beastv2_COREV4_gui.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_COREV4_mthrd.c -o beastv2_COREV4_mthrd.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_basis_allocinitmem.c -o beastv2_basis_allocinitmem.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_basis_computexy_q.c -o beastv2_basis_computexy_q.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_basis_cvtKnotsToBinVec.c -o beastv2_basis_cvtKnotsToBinVec.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_basis_genrandbasis.c -o beastv2_basis_genrandbasis.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_basis_gensegment.c -o beastv2_basis_gensegment.o
beastv2_basis_gensegment.c:149:12: warning: variable 'season_csum' set but not used [-Wunused-but-set-variable]
149 | F32PTR season_csum=SEASON.SQR_CSUM+1L+(N+1) * (seg->ORDER1-1)*2;
| ^
beastv2_basis_gensegment.c:164:6: warning: variable 'Npad' set but not used [-Wunused-but-set-variable]
164 | I32 Npad=((N+7L)/8L) * 8L; Npad=N;
| ^
beastv2_basis_gensegment.c:172:6: warning: variable 'Npad' set but not used [-Wunused-but-set-variable]
172 | I32 Npad=((N+7L)/8L) * 8L; Npad=N;
| ^
3 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_basis_pickcmptId.c -o beastv2_basis_pickcmptId.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_basis_proposeNew_q.c -o beastv2_basis_proposeNew_q.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_basis_updateKsKe_prec0123.c -o beastv2_basis_updateKsKe_prec0123.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_basis_updategoodvec.c -o beastv2_basis_updategoodvec.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_date.c -o beastv2_date.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_func_q.c -o beastv2_func_q.o
beastv2_func_q.c:199:6: warning: variable 'Ksegcsum' set but not used [-Wunused-but-set-variable]
199 | I32 Ksegcsum=0;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_io_in_args.c -o beastv2_io_in_args.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_io_in_readts.c -o beastv2_io_in_readts.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_io_out_allocmem_q.c -o beastv2_io_out_allocmem_q.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_io_out_printargs.c -o beastv2_io_out_printargs.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_io_out_tsextractprint.c -o beastv2_io_out_tsextractprint.o
beastv2_io_out_tsextractprint.c:412:14: warning: variable 'N' set but not used [-Wunused-but-set-variable]
412 | int N;
| ^
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_io_out_write_q.c -o beastv2_io_out_write_q.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_model_allocinit_q.c -o beastv2_model_allocinit_q.o
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_prior_model.c -o beastv2_prior_model.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_prior_precfunc.c -o beastv2_prior_precfunc.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_svdbasis.c -o beastv2_svdbasis.o
beastv2_svdbasis.c:215:7: warning: variable 'meanSqr' set but not used [-Wunused-but-set-variable]
215 | F32 meanSqr=0;
| ^
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c beastv2_xxyy_allocmem_q.c -o beastv2_xxyy_allocmem_q.o
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c globalvars.c -o globalvars.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c glue_code.c -o glue_code.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -D_REENTRANT -DR_RELEASE -isystem /usr/local/clang18/include -I/usr/local/clang/include -DR_RELEASE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tetris.c -o tetris.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o Rbeast.so _beastv2_gui_plot.o _beastv2_gui_winmain.o abc_common.o abc_cpu.o abc_date.o abc_dir.o abc_ide_util_R.o abc_ide_util_common.o abc_ide_util_matlab.o abc_ide_util_python.o abc_ioFlush.o abc_lzw.o abc_mat.o abc_math.o abc_math_avx.o abc_math_avx512.o abc_mcmc.o abc_mem.o abc_mem_ext.o abc_pthread.o abc_rand_pcg_global.o abc_rand_pcg_local.o abc_rand_pcg_local_avx2.o abc_rand_pcg_local_avx512.o abc_rand_pcg_local_generic.o abc_sort.o abc_svd.o abc_system.o abc_timer.o abc_tranpose.o abc_ts_func.o abc_vec.o abc_vec_avx2.o abc_vec_avx512.o abc_vec_generic.o abc_win32_demo.o beastv2_COREV4.o beastv2_COREV4_bic.o beastv2_COREV4_bic_mthrd.o beastv2_COREV4_gui.o beastv2_COREV4_mthrd.o beastv2_basis_allocinitmem.o beastv2_basis_computexy_q.o beastv2_basis_cvtKnotsToBinVec.o beastv2_basis_genrandbasis.o beastv2_basis_gensegment.o beastv2_basis_pickcmptId.o beastv2_basis_proposeNew_q.o beastv2_basis_updateKsKe_prec0123.o beastv2_basis_updategoodvec.o beastv2_date.o beastv2_func_q.o beastv2_io_in_args.o beastv2_io_in_readts.o beastv2_io_out_allocmem_q.o beastv2_io_out_printargs.o beastv2_io_out_tsextractprint.o beastv2_io_out_write_q.o beastv2_model_allocinit_q.o beastv2_prior_model.o beastv2_prior_precfunc.o beastv2_svdbasis.o beastv2_xxyy_allocmem_q.o globalvars.o glue_code.o tetris.o -lpthread -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rbeast/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Rbeast/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Rbeast/src'
installing to /data/gannet/ripley/R/packages/tests-clang/Rbeast.Rcheck/00LOCK-Rbeast/00new/Rbeast/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rbeast)