* installing *source* package ‘Ravages’ ...
** this is package ‘Ravages’ version ‘1.1.3’
** package ‘Ravages’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.8’
using C++ compiler: ‘clang version 21.1.8’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Ravages/src'
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c GPG.cpp -o GPG.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c GPG2.cpp -o GPG2.o
In file included from GPG.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from GPG.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from GPG.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from GPG2.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from GPG2.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from GPG.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from GPG2.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from GPG2.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c allelecounter.cpp -o allelecounter.o
5 warnings generated.
5 warnings generated.
In file included from allelecounter.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
14 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c allelecounter2.cpp -o allelecounter2.o
In file included from allelecounter2.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
14 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c alleles_by_group.cpp -o alleles_by_group.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c block_diag.cpp -o block_diag.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c burden.cpp -o burden.o
In file included from alleles_by_group.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c colsums.cpp -o colsums.o
In file included from block_diag.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from block_diag.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from block_diag.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from block_diag.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
14 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c count_alternative_alleles.cpp -o count_alternative_alleles.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c itere_combinaisons.cpp -o itere_combinaisons.o
5 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c jaccard.cpp -o jaccard.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c label_genes.cpp -o label_genes.o
In file included from count_alternative_alleles.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c label_multiple_genes.cpp -o label_multiple_genes.o
14 warnings generated.
In file included from jaccard.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
14 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c m4_stats.cpp -o m4_stats.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c matrix4.cpp -o matrix4.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c moments.cpp -o moments.o
In file included from moments.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from moments.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from moments.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c random_bed_matrix.cpp -o random_bed_matrix.o
In file included from moments.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c ravages_init.c -o ravages_init.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rbm_haplos_freqs.cpp -o rbm_haplos_freqs.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rbm_haplos_thresholds.cpp -o rbm_haplos_thresholds.o
5 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rbm_haplos_thresholds_filling.cpp -o rbm_haplos_thresholds_filling.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c skat.cpp -o skat.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c skatBootstrap.cpp -o skatBootstrap.o
In file included from skat.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
In file included from skatBootstrap.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from skatBootstrap.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from skatBootstrap.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from skatBootstrap.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
14 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c skatMoments.cpp -o skatMoments.o
In file included from skatBootstrap.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
19 warnings generated.
In file included from skatMoments.cpp:1:
In file included from ./GPG.h:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from skatMoments.cpp:1:
In file included from ./GPG.h:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from skatMoments.cpp:1:
In file included from ./GPG.h:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from skatMoments.cpp:1:
In file included from ./GPG.h:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
5 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c skatStats.cpp -o skatStats.o
In file included from skatStats.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from skatStats.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from skatStats.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from skatStats.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
5 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c sum_by_group.cpp -o sum_by_group.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c sum_fst.cpp -o sum_fst.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c sum_fst1.cpp -o sum_fst1.o
In file included from sum_fst.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
14 warnings generated.
In file included from sum_fst1.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
14 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c weightedGenotypes.cpp -o weightedGenotypes.o
In file included from weightedGenotypes.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from weightedGenotypes.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from weightedGenotypes.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c weighted_left_product.cpp -o weighted_left_product.o
In file included from weightedGenotypes.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
5 warnings generated.
In file included from weighted_left_product.cpp:9:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
14 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gaston/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c weighted_left_product2.cpp -o weighted_left_product2.o
In file included from weighted_left_product2.cpp:9:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/data/gannet/ripley/R/test-clang/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
14 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o Ravages.so GPG.o GPG2.o allelecounter.o allelecounter2.o alleles_by_group.o block_diag.o burden.o colsums.o count_alternative_alleles.o itere_combinaisons.o jaccard.o label_genes.o label_multiple_genes.o m4_stats.o matrix4.o moments.o random_bed_matrix.o ravages_init.o rbm_haplos_freqs.o rbm_haplos_thresholds.o rbm_haplos_thresholds_filling.o skat.o skatBootstrap.o skatMoments.o skatStats.o sum_by_group.o sum_fst.o sum_fst1.o weightedGenotypes.o weighted_left_product.o weighted_left_product2.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Ravages/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Ravages/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Ravages/src'
installing to /data/gannet/ripley/R/packages/tests-clang/Ravages.Rcheck/00LOCK-Ravages/00new/Ravages/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Ravages)