* installing *source* package ‘Rankcluster’ ...
** this is package ‘Rankcluster’ version ‘0.98.0’
** package ‘Rankcluster’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 23.1.0’
using C++ compiler: ‘clang version 23.1.0’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/Rankcluster/src'
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c ISRfunctions.cpp -o ISRfunctions.o
ISRfunctions.cpp:20:28: warning: variable 'gjmoinsb' set but not used [-Wunused-but-set-variable]
20 | int gplus(0), gmoins(0), gjmoinsb(0), gjplusb(0), index(0);
| ^
ISRfunctions.cpp:20:41: warning: variable 'gjplusb' set but not used [-Wunused-but-set-variable]
20 | int gplus(0), gmoins(0), gjmoinsb(0), gjplusb(0), index(0);
| ^
In file included from ISRfunctions.cpp:6:
In file included from ./ISRfunctions.h:9:
In file included from ./Typedef.h:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
| ^~~~~~~~~~~~~~~~~~~~~
In file included from ISRfunctions.cpp:6:
In file included from ./ISRfunctions.h:9:
In file included from ./Typedef.h:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
| ^~~~~~~~~~~~~~~~~~~
4 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c RankCluster.cpp -o RankCluster.o
RankCluster.cpp:804:7: warning: variable 'nbMu' set but not used [-Wunused-but-set-variable]
804 | int nbMu(1);
| ^
RankCluster.cpp:1333:9: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
1333 | convergence_ = true;
| ^
RankCluster.cpp:1323:7: note: previous statement is here
1323 | for (int j = 0; j < d_; j++)
| ^
In file included from RankCluster.cpp:17:
In file included from ./RankCluster.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
| ^~~~~~~~~~~~~~~~~~~~~
In file included from RankCluster.cpp:17:
In file included from ./RankCluster.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
| ^~~~~~~~~~~~~~~~~~~
4 warnings generated.
/usr/local/clang23/bin/clang-23 -std=gnu23 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c Rankcluster_init.c -o Rankcluster_init.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c RinterfaceFunctions.cpp -o RinterfaceFunctions.o
In file included from RinterfaceFunctions.cpp:2:
In file included from ./RinterfaceFunctions.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RinterfaceFunctions.cpp:2:
In file included from ./RinterfaceFunctions.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RinterfaceFunctions.cpp:2:
In file included from ./RinterfaceFunctions.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RinterfaceFunctions.cpp:2:
In file included from ./RinterfaceFunctions.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
RinterfaceFunctions.cpp:109:9: warning: unused variable 'nb' [-Wunused-variable]
109 | int nb = as<int>(nb_cpus);
| ^~
In file included from RinterfaceFunctions.cpp:1:
In file included from ./functions.h:11:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
| ^~~~~~~~~~~~~~~~~~~~~
In file included from RinterfaceFunctions.cpp:1:
In file included from ./functions.h:11:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
| ^~~~~~~~~~~~~~~~~~~
In file included from RinterfaceFunctions.cpp:2:
In file included from ./RinterfaceFunctions.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template]
18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template]
270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from RinterfaceFunctions.cpp:2:
In file included from ./RinterfaceFunctions.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template]
20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from RinterfaceFunctions.cpp:2:
In file included from ./RinterfaceFunctions.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template]
35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n)
| ^~~~~~~~~
In file included from RinterfaceFunctions.cpp:2:
In file included from ./RinterfaceFunctions.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template]
501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */
| ^~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template]
717 | static void init_scoring
| ^~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template]
954 | static IndexType find_ordering /* return the number of garbage collections */
| ^~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template]
1566 | static void detect_super_cols
| ^~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template]
1717 | static IndexType garbage_collection /* returns the new value of pfree */
| ^~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template]
342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats])
| ^~~~~~~~~~~~~~~~
18 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c RinterfaceSEM.cpp -o RinterfaceSEM.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c RinterfaceTest.cpp -o RinterfaceTest.o
In file included from RinterfaceSEM.cpp:1:
In file included from ./RinterfaceSEM.h:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RinterfaceSEM.cpp:1:
In file included from ./RinterfaceSEM.h:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c functions.cpp -o functions.o
In file included from RinterfaceSEM.cpp:1:
In file included from ./RinterfaceSEM.h:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RinterfaceSEM.cpp:1:
In file included from ./RinterfaceSEM.h:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from RinterfaceTest.cpp:1:
In file included from ./RinterfaceTest.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RinterfaceTest.cpp:1:
In file included from ./RinterfaceTest.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RinterfaceSEM.cpp:1:
In file included from ./RinterfaceSEM.h:4:
In file included from ./RankCluster.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
| ^~~~~~~~~~~~~~~~~~~~~
In file included from RinterfaceSEM.cpp:1:
In file included from ./RinterfaceSEM.h:4:
In file included from ./RankCluster.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
| ^~~~~~~~~~~~~~~~~~~
In file included from RinterfaceSEM.cpp:1:
In file included from ./RinterfaceSEM.h:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template]
18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template]
270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from RinterfaceSEM.cpp:1:
In file included from ./RinterfaceSEM.h:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template]
20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from RinterfaceSEM.cpp:1:
In file included from ./RinterfaceSEM.h:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template]
35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n)
| ^~~~~~~~~
In file included from RinterfaceSEM.cpp:1:
In file included from ./RinterfaceSEM.h:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template]
501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */
| ^~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template]
717 | static void init_scoring
| ^~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template]
954 | static IndexType find_ordering /* return the number of garbage collections */
| ^~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template]
1566 | static void detect_super_cols
| ^~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template]
1717 | static IndexType garbage_collection /* returns the new value of pfree */
| ^~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template]
342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats])
| ^~~~~~~~~~~~~~~~
In file included from RinterfaceTest.cpp:1:
In file included from ./RinterfaceTest.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RinterfaceTest.cpp:1:
In file included from ./RinterfaceTest.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
functions.cpp:239:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
239 | return distK;
| ^
functions.cpp:235:5: note: previous statement is here
235 | for (int j(i + 1); j < m; j++)
| ^
functions.cpp:459:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
459 | return g - 1;
| ^
functions.cpp:455:3: note: previous statement is here
455 | for (int j = 0; j < g; j++)
| ^
In file included from functions.cpp:13:
In file included from ./functions.h:11:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
| ^~~~~~~~~~~~~~~~~~~~~
In file included from functions.cpp:13:
In file included from ./functions.h:11:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
| ^~~~~~~~~~~~~~~~~~~
In file included from RinterfaceTest.cpp:1:
In file included from ./RinterfaceTest.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
| ^~~~~~~~~~~~~~~~~~~~~
In file included from RinterfaceTest.cpp:1:
In file included from ./RinterfaceTest.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
| ^~~~~~~~~~~~~~~~~~~
In file included from RinterfaceTest.cpp:1:
In file included from ./RinterfaceTest.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template]
18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template]
270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from RinterfaceTest.cpp:1:
In file included from ./RinterfaceTest.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template]
20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from RinterfaceTest.cpp:1:
In file included from ./RinterfaceTest.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template]
35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n)
| ^~~~~~~~~
In file included from RinterfaceTest.cpp:1:
In file included from ./RinterfaceTest.h:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template]
501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */
| ^~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template]
717 | static void init_scoring
| ^~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template]
954 | static IndexType find_ordering /* return the number of garbage collections */
| ^~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template]
1566 | static void detect_super_cols
| ^~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template]
1717 | static IndexType garbage_collection /* returns the new value of pfree */
| ^~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template]
342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats])
| ^~~~~~~~~~~~~~~~
17 warnings generated.
4 warnings generated.
17 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c test.cpp -o test.o
In file included from test.cpp:9:
In file included from ./functions.h:11:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
| ^~~~~~~~~~~~~~~~~~~~~
In file included from test.cpp:9:
In file included from ./functions.h:11:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
| ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o Rankcluster.so ISRfunctions.o RankCluster.o Rankcluster_init.o RinterfaceFunctions.o RinterfaceSEM.o RinterfaceTest.o functions.o test.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/Rankcluster/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/Rankcluster/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/Rankcluster/src'
installing to /data/localhost/ripley/R/packages/tests-clang/Rankcluster.Rcheck/00LOCK-Rankcluster/00new/Rankcluster/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rankcluster)