* installing *source* package ‘RTransProb’ ...
** package ‘RTransProb’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RTransProb/src'
clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/test-clang/RcppArmadillo/include" -isystem /usr/local/clang/include -DUSE_FC_LEN_T -fopenmp  -fpic  -g -O3 -Wall -pedantic -frtti  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/test-clang/RcppArmadillo/include" -isystem /usr/local/clang/include -DUSE_FC_LEN_T -fopenmp  -fpic  -g -O3 -Wall -pedantic -frtti  -c getFunctions.cpp -o getFunctions.o
getFunctions.cpp:90:16: warning: explicitly assigning value of variable of type 'arma::mat' (aka 'Mat<double>') to itself [-Wself-assign-overloaded]
      transMat = transMat;
      ~~~~~~~~ ^ ~~~~~~~~
1 warning generated.
clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o RTransProb.so RcppExports.o getFunctions.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RTransProb/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/RTransProb/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/RTransProb/src'
installing to /data/gannet/ripley/R/packages/tests-clang/RTransProb.Rcheck/00LOCK-RTransProb/00new/RTransProb/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RTransProb)