• using R Under development (unstable) (2026-03-06 r89561)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)     flang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-03-07 09:05:10 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘RTMB/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘RTMB’ version ‘1.8’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘RTMB’ can be installed ... [11m/15m] OK See the install log for details.
• used C++ compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
• checking installed package size ... INFO   installed size is 13.4Mb   sub-directories of 1Mb or more:     R 1.1Mb     libs 11.4Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [39s/56s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... ERROR Running examples in ‘RTMB-Ex.R’ failed The error most likely occurred in: > ### Name: OSA-residuals > ### Title: Recursive quantile residuals > ### Aliases: OSA-residuals oneStepPredict [.osa length.osa dim.osa > ### is.array.osa is.matrix.osa > > ### ** Examples > > set.seed(1) > rw <- cumsum(.5*rnorm(20)) > obs <- rpois(20, lambda=exp(rw)) > func <- function(p) { + obs <- OBS(obs) ## Mark 'obs' for OSA calculation on request + ans <- 0 + jump <- c(p$rw[1], diff(p$rw)) + ans <- ans - sum(dnorm(jump, sd=p$sd, log=TRUE)) + ans <- ans - sum(dpois(obs, lambda=exp(p$rw), log=TRUE)) + ans + } > obj <- MakeADFun(func, + parameters=list(rw=rep(0,20), sd=1), + random="rw") Error in advector(e2) :   Invalid argument to 'advector' (lost class attribute?) Calls: MakeADFun ... diff.advector -> diff_patch -> Ops.advector -> Arith2 -> advector Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [1s/37s] OK   Running ‘tinytest.R’ [1s/36s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [16s/18s] ERROR Error(s) in re-building vignettes: --- re-building ‘RTMB-advanced.rmd’ using rmarkdown Quitting from RTMB-advanced.rmd:236-239 [unnamed-chunk-21] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `advector()`: ! Invalid argument to 'advector' (lost class attribute?) --- Backtrace:     ▆  1. └─RTMB::MakeTape(diff, numeric(5))  2. └─RTMB:::.MakeTape(f, x)  3. ├─base (local) f(x)  4. └─RTMB::diff.advector(x)  5. └─RTMB:::diff_patch(x, lag = lag, differences = differences, ...)  6. └─RTMB::Ops.advector(...)  7. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)  8. └─RTMB::advector(e2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'RTMB-advanced.rmd' failed with diagnostics: Invalid argument to 'advector' (lost class attribute?) --- failed re-building ‘RTMB-advanced.rmd’ --- re-building ‘RTMB-introduction.rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘RTMB-introduction.rmd’ SUMMARY: processing the following file failed:   ‘RTMB-advanced.rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [9s/10s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs