• using R Under development (unstable) (2025-08-08 r88539)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 20.1.8     flang version 20.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘ProjectTemplate/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ProjectTemplate’ version ‘0.11.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ProjectTemplate’ can be installed ... [9s/11s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/19s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [66s/108s] ERROR   Running ‘run-all.R’ [33s/56s]   Running ‘testthat.R’ [32s/51s] Running the tests in ‘tests/run-all.R’ failed. Complete output:   > library(testthat)   >   > test_check("ProjectTemplate")   Loading required package: ProjectTemplate   Loading required package: digest   Loading required package: tibble   Project name: test_project31c0b2643b7e4d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31c0b222ec18c8   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31c0b2796f026a   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project31c0b2796f026a   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData   dummy 999   Configuration for project: test_project31c0b2796f026a   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData      Additional custom config present for this project:   Objects to clear from memory: config helper.function project.info   Project name: test_project31c0b265b85925   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: foo.reader.R    Running helper script: helpers.R   Autoloading data    Loading data set: example     Creating cache entry from global environment: example   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Following objects not in memory:   Objects to clear from memory: xxxx   Project name: test_project31c0b21e51a364   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: helper.function project.info   Clearing cache for project: test_project31c0b21e51a364   Clearing cache for project: test_project31c0b245d44c2e   Objects to clear from memory: xxx   Project name: test_project31c0b245d44c2e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from CODE: xxxx   Objects to clear from memory: config project.info   Objects to clear from memory: project.info   Objects to clear from memory: yyy   Following objects not in memory: xxx   Following objects not in memory: xxx   Variables not cleared: config   No objects to clear   Objects to clear from memory: .yyy helper.function project.info   Project name: test_project31c0b27379ddf8   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b27379ddf8   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project31c0b2508b6225   Project name: test_project31c0b23feff607   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b26e5b5401   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!   Current Directory: test_project31c0b232dcb0a8 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project31c0b232dcb0a8 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project231c0b26113d9aa is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Objects to clear from memory: config helper.function project.info   No objects to clear   Objects to clear from memory: config file31c0b2d35aad8 helper.function project.info     Creating cache entry from CODE: test_data   Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run load.project()      Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run clear.cache() again.      Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run cache() again.      Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run reload.project() again.      Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run test.project() again.      Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run stub.tests() again.      Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run project.config()      Project name: test_project31c0b24e4afd8d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: Thumbs   Loading required namespace: RSQLite     Creating cache entry from global environment: var_to_cache   Loading required package: data.table        01-test_data.py start   01-test_data.py finish        02-test_data.py start   ['1', '20']   ['2', '30']   ['3', '40']   Python data exists in the environment   y   02-test_data.py finish   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file contained unused entries which have been   removed. The unused entries are:   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] TRUE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Project name: test_project31c0b2724135b6   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: .Random.seed config helper.function project.info   Project name: test_project31c0b2a1fd437   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b2a1fd437   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31c0b225207f69   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b225207f69   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31c0b210257414   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b210257414   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31c0b245e18756   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31c0b26fc0a668   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b26fc0a668   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project31c0b240445ac4   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b240445ac4   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31c0b26b3a3289   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b26b3a3289   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project31c0b2ea7b725   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b2ea7b725   Loading project configuration   Objects to clear from memory: config helper.function project.info   Project name: test_project31c0b24a897638   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b24a897638   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Loading required package: qs   qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103     Creating cache entry from global environment: cache.qs     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data     Loading table: example_30a     Loading table: example_30b     Loading table: example_31a     Loading table: example_31b     Loading table: example_28   re-encoding from CP1252   re-encoding from CP1252   Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22   Objects to clear from memory: config helper.function project.info   Items in cache will not be cleared   Use reload.project(reset=TRUE) to clear cache also   Objects to clear from memory: helper.function project.info z   Reloading Project ...   Project name: test_project31c0b25a533387   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading cached data set: z   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info x y z   Project name: test_project31c0b24a48c1c1   Loading project configuration   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b2fc58dc5   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31c0b211be7f11   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: file_not_in_full_template    Translating data.frame to tibble: file_not_in_full_template     Creating cache entry from global environment: file_not_in_full_template   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   [1] FALSE   [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──   `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.      [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]   Error: Test failures   Execution halted Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(ProjectTemplate)   Loading required package: digest   Loading required package: tibble   >   > test_check("ProjectTemplate")   Project name: test_project31e1eb12ad1dac   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31e1eb315aca9c   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31e1eb47850edf   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project31e1eb47850edf   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData   dummy 999   Configuration for project: test_project31e1eb47850edf   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData      Additional custom config present for this project:   Objects to clear from memory: config helper.function project.info   Project name: test_project31e1eb2f4e9797   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: foo.reader.R    Running helper script: helpers.R   Autoloading data    Loading data set: example     Creating cache entry from global environment: example   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Following objects not in memory:   Objects to clear from memory: xxxx   Project name: test_project31e1eb4691b05a   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: helper.function project.info   Clearing cache for project: test_project31e1eb4691b05a   Clearing cache for project: test_project31e1ebc3bcda1   Objects to clear from memory: xxx   Project name: test_project31e1ebc3bcda1   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from CODE: xxxx   Objects to clear from memory: config project.info   Objects to clear from memory: project.info   Objects to clear from memory: yyy   Following objects not in memory: xxx   Following objects not in memory: xxx   Variables not cleared: config   No objects to clear   Objects to clear from memory: .yyy helper.function project.info   Project name: test_project31e1ebe5e7d8f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1ebe5e7d8f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project31e1eb7a5a482f   Project name: test_project31e1eb2195ebe3   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1eb7e860bd3   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!   Current Directory: test_project31e1eb33d51a66 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project31e1eb33d51a66 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project231e1eb16fd1405 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Objects to clear from memory: config helper.function project.info   No objects to clear   Objects to clear from memory: config file31e1eb744b0a2b helper.function project.info     Creating cache entry from CODE: test_data   Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run load.project()      Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run clear.cache() again.      Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run cache() again.      Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run reload.project() again.      Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run test.project() again.      Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run stub.tests() again.      Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run project.config()      Project name: test_project31e1eb3695d043   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: Thumbs   Loading required namespace: RSQLite     Creating cache entry from global environment: var_to_cache   Loading required package: data.table        01-test_data.py start   01-test_data.py finish        02-test_data.py start   ['1', '20']   ['2', '30']   ['3', '40']   Python data exists in the environment   y   02-test_data.py finish   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file contained unused entries which have been   removed. The unused entries are:   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] TRUE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Project name: test_project31e1eb1e003af5   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: .Random.seed config helper.function project.info   Project name: test_project31e1eb26ffd724   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1eb26ffd724   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31e1eb4bee0f18   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1eb4bee0f18   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31e1eb1398ebb2   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1eb1398ebb2   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31e1eb5eb5a69a   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31e1eb7e4d421f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1eb7e4d421f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project31e1eb22da781d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1eb22da781d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project31e1eb171c3920   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1eb171c3920   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project31e1eb51d82eef   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1eb51d82eef   Loading project configuration   Objects to clear from memory: config helper.function project.info   Project name: test_project31e1eb39a89af8   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1eb39a89af8   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Loading required package: qs   qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103     Creating cache entry from global environment: cache.qs     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data     Loading table: example_30a     Loading table: example_30b     Loading table: example_31a     Loading table: example_31b     Loading table: example_28   re-encoding from CP1252   re-encoding from CP1252   Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22   Objects to clear from memory: config helper.function project.info   Items in cache will not be cleared   Use reload.project(reset=TRUE) to clear cache also   Objects to clear from memory: helper.function project.info z   Reloading Project ...   Project name: test_project31e1eb43197035   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading cached data set: z   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info x y z   Project name: test_project31e1eb791af29a   Loading project configuration   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1eb181907   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project31e1eb2279ea12   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: file_not_in_full_template    Translating data.frame to tibble: file_not_in_full_template     Creating cache entry from global environment: file_not_in_full_template   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   [1] FALSE   [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──   `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.      [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [9s/12s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR