* installing *source* package ‘Phase12Compare’ ...
** package ‘Phase12Compare’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Phase12Compare/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c SPSOCODE.cpp -o SPSOCODE.o
SPSOCODE.cpp:676:7: warning: unused variable 'm' [-Wunused-variable]
  676 |   int m=0;
      |       ^
SPSOCODE.cpp:1080:10: warning: unused variable 'p' [-Wunused-variable]
 1080 |   double p=0;
      |          ^
SPSOCODE.cpp:1081:10: warning: unused variable 'pu' [-Wunused-variable]
 1081 |   double pu=0;
      |          ^~
SPSOCODE.cpp:1082:10: warning: unused variable 'pl' [-Wunused-variable]
 1082 |   double pl=0;
      |          ^~
SPSOCODE.cpp:1083:10: warning: unused variable 'tol' [-Wunused-variable]
 1083 |   double tol=.005;
      |          ^~~
SPSOCODE.cpp:1109:7: warning: unused variable 'Count' [-Wunused-variable]
 1109 |   int Count=0;
      |       ^~~~~
SPSOCODE.cpp:1119:7: warning: unused variable 'nREP' [-Wunused-variable]
 1119 |   int nREP=0;
      |       ^~~~
SPSOCODE.cpp:1162:10: warning: unused variable 'min1' [-Wunused-variable]
 1162 |   double min1=0;
      |          ^~~~
SPSOCODE.cpp:1990:7: warning: unused variable 'Count' [-Wunused-variable]
 1990 |   int Count=0;
      |       ^~~~~
SPSOCODE.cpp:2000:7: warning: unused variable 'nREP' [-Wunused-variable]
 2000 |   int nREP=0;
      |       ^~~~
SPSOCODE.cpp:2043:10: warning: unused variable 'min1' [-Wunused-variable]
 2043 |   double min1=0;
      |          ^~~~
SPSOCODE.cpp:2821:10: warning: unused variable 'phivar' [-Wunused-variable]
 2821 |   double phivar=Hypervars[2];  //Variance parameter for frailty correlations
      |          ^~~~~~
SPSOCODE.cpp:2822:10: warning: variable 'phi' set but not used [-Wunused-but-set-variable]
 2822 |   double phi=0;
      |          ^
SPSOCODE.cpp:2893:10: warning: unused variable 'epprop' [-Wunused-variable]
 2893 |   double epprop = 0; //proposal values for epsilon
      |          ^~~~~~
SPSOCODE.cpp:2942:10: warning: unused variable 'epEC' [-Wunused-variable]
 2942 |   double epEC = 1;
      |          ^~~~
SPSOCODE.cpp:2943:10: warning: unused variable 'epTC' [-Wunused-variable]
 2943 |   double epTC = 1;
      |          ^~~~
SPSOCODE.cpp:2982:10: warning: unused variable 'holdmin' [-Wunused-variable]
 2982 |   double holdmin=1;
      |          ^~~~~~~
SPSOCODE.cpp:3744:7: warning: unused variable 'Stopped' [-Wunused-variable]
 3744 |   int Stopped=0;
      |       ^~~~~~~
SPSOCODE.cpp:3791:7: warning: unused variable 'Count' [-Wunused-variable]
 3791 |   int Count=0;
      |       ^~~~~
SPSOCODE.cpp:3801:7: warning: unused variable 'nREP' [-Wunused-variable]
 3801 |   int nREP=0;
      |       ^~~~
SPSOCODE.cpp:3824:7: warning: unused variable 'm' [-Wunused-variable]
 3824 |   int m=0;
      |       ^
SPSOCODE.cpp:3841:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable]
 3841 |   int STOPPED=0;
      |       ^
SPSOCODE.cpp:3842:7: warning: unused variable 'i' [-Wunused-variable]
 3842 |   int i=0;
      |       ^
SPSOCODE.cpp:3844:10: warning: unused variable 'min1' [-Wunused-variable]
 3844 |   double min1=0;
      |          ^~~~
SPSOCODE.cpp:3848:7: warning: unused variable 'nRep' [-Wunused-variable]
 3848 |   int nRep=0;
      |       ^~~~
SPSOCODE.cpp:4222:7: warning: unused variable 'Stopped' [-Wunused-variable]
 4222 |   int Stopped=0;
      |       ^~~~~~~
SPSOCODE.cpp:4240:10: warning: unused variable 'p' [-Wunused-variable]
 4240 |   double p=0;
      |          ^
SPSOCODE.cpp:4241:10: warning: unused variable 'pu' [-Wunused-variable]
 4241 |   double pu=0;
      |          ^~
SPSOCODE.cpp:4242:10: warning: unused variable 'pl' [-Wunused-variable]
 4242 |   double pl=0;
      |          ^~
SPSOCODE.cpp:4243:10: warning: unused variable 'tol' [-Wunused-variable]
 4243 |   double tol=.005;
      |          ^~~
SPSOCODE.cpp:4258:7: warning: unused variable 'Count' [-Wunused-variable]
 4258 |   int Count=0;
      |       ^~~~~
SPSOCODE.cpp:4268:7: warning: unused variable 'nREP' [-Wunused-variable]
 4268 |   int nREP=0;
      |       ^~~~
SPSOCODE.cpp:4294:7: warning: unused variable 'm' [-Wunused-variable]
 4294 |   int m=0;
      |       ^
SPSOCODE.cpp:4311:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable]
 4311 |   int STOPPED=0;
      |       ^
SPSOCODE.cpp:4312:7: warning: unused variable 'i' [-Wunused-variable]
 4312 |   int i=0;
      |       ^
SPSOCODE.cpp:4314:10: warning: unused variable 'min1' [-Wunused-variable]
 4314 |   double min1=0;
      |          ^~~~
SPSOCODE.cpp:4318:7: warning: unused variable 'nRep' [-Wunused-variable]
 4318 |   int nRep=0;
      |       ^~~~
37 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o Phase12Compare.so RcppExports.o SPSOCODE.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Phase12Compare/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/Phase12Compare/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/Phase12Compare/src'
installing to /data/gannet/ripley/R/packages/tests-clang/Phase12Compare.Rcheck/00LOCK-Phase12Compare/00new/Phase12Compare/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Phase12Compare)