* using log directory ‘/data/localhost/ripley/R/packages/tests-clang/OlinkAnalyzeVignettes.Rcheck’
* using R Under development (unstable) (2026-09-15 r90540)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 23.1.1
    flang version 23.1.1
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-09-16 08:37:38 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘OlinkAnalyzeVignettes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OlinkAnalyzeVignettes’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: 'OlinkAnalyze'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OlinkAnalyzeVignettes’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/OlinkAnalyzeVignettes-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘bridging_cross-product.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘bridging_cross-product.Rmd’

--- re-building ‘bridging_introduction.Rmd’ using rmarkdown

Quitting from bridging_introduction.Rmd:154-174 [preprocessing]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'OlinkAnalyze'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'bridging_introduction.Rmd' failed with diagnostics:
there is no package called 'OlinkAnalyze'
--- failed re-building ‘bridging_introduction.Rmd’

--- re-building ‘lod.Rmd’ using rmarkdown

Quitting from lod.Rmd:83-177 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'OlinkAnalyze'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'lod.Rmd' failed with diagnostics:
there is no package called 'OlinkAnalyze'
--- failed re-building ‘lod.Rmd’

--- re-building ‘outlier_exclusion.Rmd’ using rmarkdown

Quitting from outlier_exclusion.Rmd:37-87 [Outlier_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'OlinkAnalyze'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'outlier_exclusion.Rmd' failed with diagnostics:
there is no package called 'OlinkAnalyze'
--- failed re-building ‘outlier_exclusion.Rmd’

--- re-building ‘plate_randomizer.Rmd’ using rmarkdown

Quitting from plate_randomizer.Rmd:53-68 [manifest]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'OlinkAnalyze'
---
Backtrace:
    ▆
 1. ├─knitr::kable(...)
 2. ├─dplyr::slice_head(OlinkAnalyze::manifest, n = 10L)
 3. └─base::loadNamespace(x)
 4.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 5.     └─base (local) withOneRestart(expr, restarts[[1L]])
 6.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'plate_randomizer.Rmd' failed with diagnostics:
there is no package called 'OlinkAnalyze'
--- failed re-building ‘plate_randomizer.Rmd’

SUMMARY: processing the following files failed:
  ‘bridging_introduction.Rmd’ ‘lod.Rmd’ ‘outlier_exclusion.Rmd’
  ‘plate_randomizer.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR