* installing *source* package ‘MultiBD’ ...
** this is package ‘MultiBD’ version ‘1.0.1’
** package ‘MultiBD’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/MultiBD/src'
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c BidBj_Cpp.cpp -o BidBj_Cpp.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c SEIR_Cpp.cpp -o SEIR_Cpp.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c SIR_Cpp.cpp -o SIR_Cpp.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c bb_lt_Cpp.cpp -o bb_lt_Cpp.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c bb_lt_invert_Cpp.cpp -o bb_lt_invert_Cpp.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c bbd_lt_Cpp.cpp -o bbd_lt_Cpp.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c bbd_lt_invert_Cpp.cpp -o bbd_lt_invert_Cpp.o
In file included from bb_lt_invert_Cpp.cpp:1:
./bbd.h:360:6: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result]
360 | workers[i].get();
| ^~~~~~~~~~~~~~~~
bb_lt_invert_Cpp.cpp:30:10: note: in instantiation of function template specialization 'loops::C11Async::for_each<boost::iterators::counting_iterator<int>, (lambda at bb_lt_invert_Cpp.cpp:31:5)>' requested here
30 | scheme.for_each( boost::make_counting_iterator(0), boost::make_counting_iterator(Lmax),
| ^
bb_lt_invert_Cpp.cpp:118:16: note: in instantiation of function template specialization 'bb_lt_invert_Cpp_impl<loops::C11Async>' requested here
118 | return bb_lt_invert_Cpp_impl(t, lambda1, lambda2, Ap1, Bp1, direction,
| ^
In file included from bb_lt_invert_Cpp.cpp:1:
./bbd.h:360:6: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result]
360 | workers[i].get();
| ^~~~~~~~~~~~~~~~
bb_lt_invert_Cpp.cpp:60:18: note: in instantiation of function template specialization 'loops::C11Async::for_each<boost::iterators::counting_iterator<int>, (lambda at bb_lt_invert_Cpp.cpp:61:13)>' requested here
60 | scheme.for_each( boost::make_counting_iterator(0), boost::make_counting_iterator(nblocks),
| ^
bb_lt_invert_Cpp.cpp:118:16: note: in instantiation of function template specialization 'bb_lt_invert_Cpp_impl<loops::C11Async>' requested here
118 | return bb_lt_invert_Cpp_impl(t, lambda1, lambda2, Ap1, Bp1, direction,
| ^
2 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c inv_Bk1dBk_Cpp.cpp -o inv_Bk1dBk_Cpp.o
In file included from bbd_lt_invert_Cpp.cpp:1:
./bbd.h:360:6: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result]
360 | workers[i].get();
| ^~~~~~~~~~~~~~~~
bbd_lt_invert_Cpp.cpp:51:10: note: in instantiation of function template specialization 'loops::C11Async::for_each<boost::iterators::counting_iterator<int>, (lambda at bbd_lt_invert_Cpp.cpp:52:5)>' requested here
51 | scheme.for_each( boost::make_counting_iterator(0), boost::make_counting_iterator(kmax),
| ^
bbd_lt_invert_Cpp.cpp:145:16: note: in instantiation of function template specialization 'bbd_lt_invert_Cpp_impl<loops::C11Async>' requested here
145 | return bbd_lt_invert_Cpp_impl(t, a0, b0, lambda1, lambda2, mu2, gamma, x, y, A, Bp1,
| ^
In file included from bbd_lt_invert_Cpp.cpp:1:
./bbd.h:360:6: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result]
360 | workers[i].get();
| ^~~~~~~~~~~~~~~~
bbd_lt_invert_Cpp.cpp:85:18: note: in instantiation of function template specialization 'loops::C11Async::for_each<boost::iterators::counting_iterator<int>, (lambda at bbd_lt_invert_Cpp.cpp:86:13)>' requested here
85 | scheme.for_each( boost::make_counting_iterator(0), boost::make_counting_iterator(nblocks),
| ^
bbd_lt_invert_Cpp.cpp:145:16: note: in instantiation of function template specialization 'bbd_lt_invert_Cpp_impl<loops::C11Async>' requested here
145 | return bbd_lt_invert_Cpp_impl(t, a0, b0, lambda1, lambda2, mu2, gamma, x, y, A, Bp1,
| ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c lentz_plus_invBk1dBk_Cpp.cpp -o lentz_plus_invBk1dBk_Cpp.o
2 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c phi_Cpp.cpp -o phi_Cpp.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c prod_lambda2_Cpp.cpp -o prod_lambda2_Cpp.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c prod_mu2_Cpp.cpp -o prod_mu2_Cpp.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c tb_lt_Cpp.cpp -o tb_lt_Cpp.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c tb_lt_invert_Cpp.cpp -o tb_lt_invert_Cpp.o
In file included from tb_lt_invert_Cpp.cpp:1:
./bbd.h:360:6: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result]
360 | workers[i].get();
| ^~~~~~~~~~~~~~~~
tb_lt_invert_Cpp.cpp:30:10: note: in instantiation of function template specialization 'loops::C11Async::for_each<boost::iterators::counting_iterator<int>, (lambda at tb_lt_invert_Cpp.cpp:31:20)>' requested here
30 | scheme.for_each( boost::make_counting_iterator(0), boost::make_counting_iterator(Lmax),
| ^
tb_lt_invert_Cpp.cpp:118:12: note: in instantiation of function template specialization 'tb_lt_invert_Cpp_impl<loops::C11Async>' requested here
118 | return tb_lt_invert_Cpp_impl(t, lambda1, lambda2, lambda3, Ap1, Bp1, Cp1, direction,
| ^
In file included from tb_lt_invert_Cpp.cpp:1:
./bbd.h:360:6: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result]
360 | workers[i].get();
| ^~~~~~~~~~~~~~~~
tb_lt_invert_Cpp.cpp:60:30: note: in instantiation of function template specialization 'loops::C11Async::for_each<boost::iterators::counting_iterator<int>, (lambda at tb_lt_invert_Cpp.cpp:61:40)>' requested here
60 | scheme.for_each( boost::make_counting_iterator(0), boost::make_counting_iterator(nblocks),
| ^
tb_lt_invert_Cpp.cpp:118:12: note: in instantiation of function template specialization 'tb_lt_invert_Cpp_impl<loops::C11Async>' requested here
118 | return tb_lt_invert_Cpp_impl(t, lambda1, lambda2, lambda3, Ap1, Bp1, Cp1, direction,
| ^
2 warnings generated.
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o MultiBD.so BidBj_Cpp.o RcppExports.o SEIR_Cpp.o SIR_Cpp.o bb_lt_Cpp.o bb_lt_invert_Cpp.o bbd_lt_Cpp.o bbd_lt_invert_Cpp.o inv_Bk1dBk_Cpp.o lentz_plus_invBk1dBk_Cpp.o phi_Cpp.o prod_lambda2_Cpp.o prod_mu2_Cpp.o tb_lt_Cpp.o tb_lt_invert_Cpp.o
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/MultiBD/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/MultiBD/src'
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/MultiBD/src'
installing to /data/gannet/ripley/R/packages/tests-clang/MultiBD.Rcheck/00LOCK-MultiBD/00new/MultiBD/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MultiBD)