* installing *source* package ‘MicrobiomeStat’ ...
** this is package ‘MicrobiomeStat’ version ‘1.3’
** package ‘MicrobiomeStat’ successfully unpacked and MD5 sums checked
** using staged installation
Checking for NLopt library...
NLopt found in /usr
Configuration complete.
** libs
using C++ compiler: ‘clang version 21.1.8’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/MicrobiomeStat/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I/usr/include -DHAVE_NLOPT -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c ADMM.cpp -o ADMM.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I/usr/include -DHAVE_NLOPT -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I/usr/include -DHAVE_NLOPT -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c bmdd_nlopt.cpp -o bmdd_nlopt.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I/usr/include -DHAVE_NLOPT -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c nlopt_check.cpp -o nlopt_check.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o MicrobiomeStat.so ADMM.o RcppExports.o bmdd_nlopt.o nlopt_check.o -L/usr/lib -lnlopt
/usr/bin/ld: skipping incompatible /usr/lib/libnlopt.so when searching for -lnlopt
/usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/MicrobiomeStat/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/MicrobiomeStat/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/MicrobiomeStat/src'
installing to /data/gannet/ripley/R/packages/tests-clang/MicrobiomeStat.Rcheck/00LOCK-MicrobiomeStat/00new/MicrobiomeStat/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MicrobiomeStat)