* installing *source* package ‘MPBoost’ ...
** package ‘MPBoost’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 17.0.5’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/MPBoost/src'
/usr/local/clang17/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
/usr/local/clang17/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c mpboost.cpp -o mpboost.o
In file included from mpboost.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from mpboost.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
3 warnings generated.
In file included from mpboost.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/graph/adjacency_list.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/scoped_ptr.hpp:13:
/data/gannet/ripley/R/test-clang/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::no_property>' is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr<boost::no_property>' requested here
408 | property_ptr m_property;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/graph/graph_traits.hpp:61:22: note: in instantiation of template class 'boost::adjacency_list<boost::listS, boost::vecS, boost::directedS, boost::property<vertex_info1_t, int, boost::property<vertex_info2_t, int, boost::property<vertex_info3_t, boost::multiprecision::number<boost::multiprecision::backends::cpp_int_backend<>>>>>, boost::property<boost::edge_weight_t, double>>' requested here
61 | typedef typename G::vertex_descriptor vertex_descriptor;
| ^
mpboost.cpp:29:16: note: in instantiation of template class 'boost::graph_traits<boost::adjacency_list<boost::listS, boost::vecS, boost::directedS, boost::property<vertex_info1_t, int, boost::property<vertex_info2_t, int, boost::property<vertex_info3_t, boost::multiprecision::number<boost::multiprecision::backends::cpp_int_backend<>>>>>, boost::property<boost::edge_weight_t, double>>>' requested here
29 | typedef boost::graph_traits<DirectedGraph>::edge_iterator edge_iter;
| ^
/usr/local/clang17/bin/../include/c++/v1/__memory/auto_ptr.h:30:28: note: 'auto_ptr<boost::no_property>' has been explicitly marked deprecated here
30 | class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:971:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
971 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
4 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang17/lib -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o MPBoost.so RcppExports.o mpboost.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/MPBoost/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/MPBoost/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/MPBoost/src'
installing to /data/gannet/ripley/R/packages/tests-clang/MPBoost.Rcheck/00LOCK-MPBoost/00new/MPBoost/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MPBoost)