* installing *source* package ‘LCMCR’ ... ** package ‘LCMCR’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... /usr/local/clang18/bin/clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether /usr/local/clang18/bin/clang accepts -g... yes checking for /usr/local/clang18/bin/clang option to enable C11 features... none needed checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 2.5... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/LCMCR/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c R_Interface/registration.cpp -o R_Interface/registration.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c R_Interface/R_Lcm_CR.cpp -o R_Interface/R_Lcm_CR.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c NPLCM_CR_Basic_Freq.cpp -o NPLCM_CR_Basic_Freq.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c daniel2/R_Environ_Simple.cpp -o daniel2/R_Environ_Simple.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c daniel2/CChain.cpp -o daniel2/CChain.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c daniel2/CParam.cpp -o daniel2/CParam.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c daniel2/CData.cpp -o daniel2/CData.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c daniel2/CParam_generic.cpp -o daniel2/CParam_generic.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c daniel2/CVariable_Container.cpp -o daniel2/CVariable_Container.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c daniel2/dan_array_utils.cpp -o daniel2/dan_array_utils.o /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o LCMCR.so R_Interface/registration.o R_Interface/R_Lcm_CR.o ./NPLCM_CR_Basic_Freq.o daniel2/R_Environ_Simple.o daniel2/CChain.o daniel2/CParam.o daniel2/CData.o daniel2/CParam_generic.o daniel2/CVariable_Container.o daniel2/dan_array_utils.o -lgsl -lgslcblas -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/LCMCR/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/LCMCR/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/LCMCR/src' installing to /data/gannet/ripley/R/packages/tests-clang/LCMCR.Rcheck/00LOCK-LCMCR/00new/LCMCR/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LCMCR)