Install log for 'KSgeneral'

* installing *source* package ‘KSgeneral’ ...
** this is package ‘KSgeneral’ version ‘2.0.2’
** package ‘KSgeneral’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... clang-20 -std=gnu23
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang-20 -std=gnu23 accepts -g... yes
checking for clang-20 -std=gnu23 option to accept ISO C89... unsupported
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for FFTW... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/KSgeneral/src'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang20/include -I/usr/local/clang/include   -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang20/include -I/usr/local/clang/include   -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c cont_ks_dist.cpp -o cont_ks_dist.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang20/include -I/usr/local/clang/include   -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c crossprob_new.cc -o crossprob_new.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang20/include -I/usr/local/clang/include   -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c fftw_wrappers.cc -o fftw_wrappers.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang20/include -I/usr/local/clang/include   -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c fftwconvolver.cc -o fftwconvolver.o
In file included from fftwconvolver.cc:5:
./fftwconvolver.h:21:9: warning: private field 'maximum_input_size' is not used [-Wunused-private-field]
   21 |     int maximum_input_size;
      |         ^
1 warning generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang20/include -I/usr/local/clang/include   -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c k2sample_stable1.cpp -o k2sample_stable1.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang20/include -I/usr/local/clang/include   -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c poisson_pmf.cc -o poisson_pmf.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang20/include -I/usr/local/clang/include   -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c read_boundaries_file.cc -o read_boundaries_file.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang20/include -I/usr/local/clang/include   -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c string_utils.cc -o string_utils.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang20/include -I/usr/local/clang/include   -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c two_sided_noncrossing_probability.cc -o two_sided_noncrossing_probability.o
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o KSgeneral.so RcppExports.o cont_ks_dist.o crossprob_new.o fftw_wrappers.o fftwconvolver.o k2sample_stable1.o poisson_pmf.o read_boundaries_file.o string_utils.o two_sided_noncrossing_probability.o -lfftw3 -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/KSgeneral/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/KSgeneral/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/KSgeneral/src'
installing to /data/gannet/ripley/R/packages/tests-clang/KSgeneral.Rcheck/00LOCK-KSgeneral/00new/KSgeneral/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KSgeneral)