* installing *source* package ‘KODAMA’ ...
** this is package ‘KODAMA’ version ‘3.0’
** package ‘KODAMA’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.4’
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/KODAMA/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rnanoflann/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rnanoflann/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c irlba.c -o irlba.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rnanoflann/include' -I'/data/gannet/ripley/R/R-clang/library/Matrix/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c prova.cpp -o prova.o
prova.cpp:465:19: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  465 |     min_val = v22.max(index);
      |                   ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:5: note: 'max' has been explicitly marked deprecated here
  545 |   [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const;
      |     ^
prova.cpp:458:10: warning: variable 'min_val' set but not used [-Wunused-but-set-variable]
  458 |   double min_val=0;
      |          ^
prova.cpp:528:19: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  528 |     min_val = v22.max(index);
      |                   ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:5: note: 'max' has been explicitly marked deprecated here
  545 |   [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const;
      |     ^
prova.cpp:521:10: warning: variable 'min_val' set but not used [-Wunused-but-set-variable]
  521 |   double min_val=0;
      |          ^
prova.cpp:676:23: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  676 |         min_val = v22.max(index);
      |                       ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:5: note: 'max' has been explicitly marked deprecated here
  545 |   [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const;
      |     ^
prova.cpp:669:14: warning: variable 'min_val' set but not used [-Wunused-but-set-variable]
  669 |       double min_val=0;
      |              ^
prova.cpp:693:23: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  693 |         min_val = v22.max(index);
      |                       ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:5: note: 'max' has been explicitly marked deprecated here
  545 |   [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const;
      |     ^
prova.cpp:686:14: warning: variable 'min_val' set but not used [-Wunused-but-set-variable]
  686 |       double min_val=0;
      |              ^
8 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o KODAMA.so RcppExports.o irlba.o prova.o -L. -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/KODAMA/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/KODAMA/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/KODAMA/src'
installing to /data/gannet/ripley/R/packages/tests-clang/KODAMA.Rcheck/00LOCK-KODAMA/00new/KODAMA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KODAMA)