• using R Under development (unstable) (2026-01-03 r89269)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.8     flang version 21.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘GPCERF/DESCRIPTION’ ... OK
• this is package ‘GPCERF’ version ‘0.2.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘GPCERF’ can be installed ... [56s/80s] OK See the install log for details.
• used C++ compiler: ‘clang version 21.1.8’
• checking C++ specification ... INFO   specified C++17
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [32s/47s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [148s/245s] ERROR   Running ‘testthat.R’ [148s/245s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(GPCERF)   >   > test_check("GPCERF")   2026-01-03 15:27:26.217686 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   Loading required package: nnls   Saving _problems/test-compute_deriv_nn-21.R   2026-01-03 15:27:37.233435 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_deriv_weights_gp-17.R   2026-01-03 15:27:45.803274 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_m_sigma-32.R   2026-01-03 15:28:00.484319 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:28:07.447698 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:28:14.934367 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=3864061 on localhost:11060 at 15:28:15.494   2026-01-03 15:28:22.061902 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 7.127 s.   2026-01-03 15:28:22.160975 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:28:29.268226 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:28:36.510428 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_weight_gp-49.R   2026-01-03 15:28:43.493294 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:28:49.446504 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:28:55.940279 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:29:00.049753 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:29:00.122388 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:29:08.274826 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:29:08.761044 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:29:08.809946 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:29:08.860422 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:29:08.910368 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:29:08.961181 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:29:09.023705 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:29:09.108065 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:29:16.716016 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   starting worker pid=3867674 on localhost:11060 at 15:29:17.471   starting worker pid=3867673 on localhost:11060 at 15:29:17.556   2026-01-03 15:29:32.11031 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:29:38.624418 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:29:38.645971 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 15:29:38.659348 gannet.stats.ox.ac.uk 3861123 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=3868909 on localhost:11060 at 15:29:39.224   2026-01-03 15:29:46.920546 gannet.stats.ox.ac.uk 3861123 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 8.25399999999999 s.} ...   2026-01-03 15:29:46.925285 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=3869148 on localhost:11060 at 15:29:47.538   2026-01-03 15:29:54.482893 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 7.55700000000002 s.   2026-01-03 15:29:54.486624 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=3869558 on localhost:11060 at 15:29:55.049   2026-01-03 15:30:05.57085 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 11.084 s.   2026-01-03 15:30:05.574751 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 26.929 s.   2026-01-03 15:30:05.581727 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:30:05.610089 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 15:30:05.659153 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:30:05.683377 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 15:30:05.79896 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:30:05.82312 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 15:30:05.871694 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:30:11.027084 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:30:11.052073 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 15:30:11.080652 gannet.stats.ox.ac.uk 3861123 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-03 r89269), detected cores: 24   2026-01-03 15:30:11.094111 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 15:30:11.149242 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-estimate_gps-15.R   2026-01-03 15:30:20.321191 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:30:26.516551 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=3872462 on localhost:11060 at 15:30:27.163   2026-01-03 15:30:34.747612 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 8.23099999999999 s.   2026-01-03 15:30:34.75912 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=3872993 on localhost:11060 at 15:30:35.357   2026-01-03 15:30:44.135713 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 9.37700000000001 s.   Saving _problems/test-estimate_mean_sd_nn-37.R   2026-01-03 15:30:44.28964 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:30:48.859508 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:30:55.805337 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=3874250 on localhost:11060 at 15:30:56.361   2026-01-03 15:31:03.435 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 7.62900000000002 s.   2026-01-03 15:31:03.535851 gannet.stats.ox.ac.uk 3861123 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 15:31:10.673395 gannet.stats.ox.ac.uk 3861123 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=3874751 on localhost:11060 at 15:31:11.270   2026-01-03 15:31:20.291658 gannet.stats.ox.ac.uk 3861123 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 9.61500000000001 s.} ...   [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──   Expected `deriv_val[1, 1]` to equal 1.558466.   Differences:     `actual`: -1.0   `expected`: 1.6      ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──   Expected `weights[37]` to equal 3.307249e-05.   Differences:     `actual`: -0.00011   `expected`: 0.00003      ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──   Expected `gp_cerf[10]` to equal 2.105425.   Differences:     `actual`: -6.1   `expected`: 2.1      ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────   Expected `weight$weight[28]` to equal 0.0002182767.   Differences:     `actual`: 0.00000   `expected`: 0.00022      ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────   Expected `gps_m$gps[4, 1]` to equal 8.74310154.   Differences:     `actual`: 7.3   `expected`: 8.7      ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──   Expected `val[10]` to equal 5.031225.   Differences:     `actual`: 5.067   `expected`: 5.031         [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [133s/496s] OK
• checking PDF version of manual ... [8s/27s] OK
• checking HTML version of manual ... [4s/13s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR