- using R Under development (unstable) (2026-02-03 r89373)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 21.1.8
flang version 21.1.8
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
* current time: 2026-02-03 12:34:14Z
- using option ‘--no-stop-on-test-error’
- checking for file ‘GFE/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘GFE’ version ‘0.1.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘GFE’ can be installed ... [9s/28s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s/39s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [17s/45s] ERROR
Running examples in ‘GFE-Ex.R’ failed
The error most likely occurred in:
> ### Name: reSamGF
> ### Title: Gross flows variance estimation.
> ### Aliases: reSamGF
>
> ### ** Examples
>
> library(TeachingSampling)
Loading required package: dplyr
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Loading required package: magrittr
> library(data.table)
Attaching package: ‘data.table’
The following objects are masked from ‘package:dplyr’:
between, first, last
The following object is masked from ‘package:base’:
%notin%
> # Colombia's electoral candidates in 2014
> candidates_t0 <- c("Clara","Enrique","Santos","Martha","Zuluaga","Blanco", "NoVoto")
> candidates_t1 <- c("Santos","Zuluaga","Blanco", "NoVoto")
>
> N <- 100000
> nCanT0 <- length(candidates_t0)
> nCanT1 <- length(candidates_t1)
>
> # Initial probabilities
> eta <- matrix(c(0.10, 0.10, 0.20, 0.17, 0.28, 0.1, 0.05),
+ byrow = TRUE, nrow = nCanT0)
> # Transition probabilities
> P <- matrix(c(0.10, 0.60, 0.15, 0.15,
+ 0.30, 0.10, 0.25, 0.35,
+ 0.34, 0.25, 0.16, 0.25,
+ 0.25, 0.05, 0.35, 0.35,
+ 0.10, 0.25, 0.45, 0.20,
+ 0.12, 0.36, 0.22, 0.30,
+ 0.10, 0.15, 0.30, 0.45),
+ byrow = TRUE, nrow = nCanT0)
>
> citaMod <- matrix(, ncol = nCanT1, nrow = nCanT0)
> row.names(citaMod) <- candidates_t0
> colnames(citaMod) <- candidates_t1
>
> for(ii in 1:nCanT0){
+ citaMod[ii,] <- c(rmultinom(1, size = N * eta[ii,], prob = P[ii,]))
+ }
>
> # # Model I
> psiI <- 0.9
> rhoRRI <- 0.9
> rhoMMI <- 0.5
>
> citaModI <- matrix(nrow = nCanT0 + 1, ncol = nCanT1 + 1)
> rownames(citaModI) <- c(candidates_t0, "Non_Resp")
> colnames(citaModI) <- c(candidates_t1, "Non_Resp")
>
> citaModI[1:nCanT0, 1:nCanT1] <- P * c(eta) * rhoRRI * psiI
> citaModI[(nCanT0 + 1), (nCanT1 + 1)] <- rhoMMI * (1-psiI)
> citaModI[1:nCanT0, (nCanT1 + 1)] <- (1-rhoRRI) * psiI * rowSums(P * c(eta))
> citaModI[(nCanT0 + 1), 1:nCanT1 ] <- (1-rhoMMI) * (1-psiI) * colSums(P * c(eta))
> citaModI <- round_preserve_sum(citaModI * N)
> DBcitaModI <- createBase(citaModI)
>
> # Creating auxiliary information
> DBcitaModI[,AuxVar := rnorm(nrow(DBcitaModI), mean = 45, sd = 10)]
> # Selects a sample with unequal probabilities
> res <- S.piPS(n = 1200, as.data.frame(DBcitaModI)[,"AuxVar"])
> sam <- res[,1]
> pik <- res[,2]
> DBcitaModISam <- copy(DBcitaModI[sam,])
> DBcitaModISam[,Pik := pik]
>
> # Gross flows estimation
> estima <- estGF(sampleBase = DBcitaModISam, niter = 500, model = "II", colWeights = "Pik")
> # gross flows variance estimation
> varEstima <- reSamGF(sampleBase = DBcitaModISam, type = "Bootstrap", nRepBoot = 100,
+ model = "II", niter = 101, colWeights = "Pik")
Error:
! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `group_by()` instead.
ℹ See vignette('programming') for more help
Backtrace:
▆
1. ├─GFE::reSamGF(...)
2. │ └─GFE (local) varParam(EstGF)
3. │ └─... %>% as.data.frame()
4. ├─base::as.data.frame(.)
5. ├─dplyr::summarize_all(...)
6. │ └─dplyr:::manip_all(...)
7. │ ├─rlang::syms(tbl_nongroup_vars(.tbl))
8. │ │ └─rlang:::map(x, sym)
9. │ │ └─base::lapply(.x, .f, ...)
10. │ └─dplyr::tbl_nongroup_vars(.tbl)
11. │ ├─generics::setdiff(tbl_vars(x), group_vars(x))
12. │ └─dplyr::tbl_vars(x)
13. │ ├─dplyr:::new_sel_vars(tbl_vars_dispatch(x), group_vars(x))
14. │ │ └─base::structure(...)
15. │ └─dplyr:::tbl_vars_dispatch(x)
16. └─dplyr::group_by_(., var2)
17. └─dplyr:::lazy_defunct("group_by")
18. └─lifecycle::deprecate_stop(...)
19. └─lifecycle:::deprecate_stop0(msg)
20. └─rlang::cnd_signal(...)
Execution halted
- checking PDF version of manual ... [9s/24s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR